Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  239 bits (609), Expect = 4e-67
 Identities = 140/353 (39%), Positives = 216/353 (61%), Gaps = 1/353 (0%)

Query: 325 VVLVSALSAVFLLIFYLYAGFYASTRTT-LRRLGAMMDKVAAGDMTVTFVAQSRDELGDL 383
           V ++ A +A+ +++  L A       TT L+    ++++VA+GD++       +DELG L
Sbjct: 286 VQMIIAATALAMVLGILAAWVITRQITTPLQETLEVVERVASGDLSRNLNVDRKDELGKL 345

Query: 384 GQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQVATAMNQM 443
                     + +L+  +   V+Q+   A ++  V+ Q++  V+ Q+++ +QVATAM++M
Sbjct: 346 QATIQRMTVSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEM 405

Query: 444 SSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQVINQLATDS 503
           ++T QEVAR+A  A  +A + + +   G  +V      I RLA+ +  S + +  L  +S
Sbjct: 406 TATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQES 465

Query: 504 QSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARRTQHSTEEIE 563
             I SVL+VIKS+AEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA+RTQ STEEIE
Sbjct: 466 DKIGSVLDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIE 525

Query: 564 QMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQNQQIAAAVE 623
            +I+RLQSG   A   M SS ++++ +V  + R   +L NI   V  I   NQQIAAA E
Sbjct: 526 ALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAE 585

Query: 624 QQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAFRV 676
           +Q+A A +I+++I+ +    E  +  + +T A+S +L+     L+ L+  F V
Sbjct: 586 EQSATAEEINRSIINVRDVSEQTSAASEETAASSVELARLGNHLQVLVSRFTV 638



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 79/454 (17%), Positives = 167/454 (36%), Gaps = 77/454 (16%)

Query: 61  GSSLALRRDLETLNNQVQINATLGQSGKAGDLEGKISALEQSVLSRLQSLNA-------- 112
           G + + R D E   N+   +A  G +  AGD+    S + Q  ++ L    A        
Sbjct: 186 GYTYSGRPDFEKDANKAIDDAVTGINTLAGDISSTYSPMLQQAIAGLNGYRAAVGKYRDA 245

Query: 113 ------------------MATEPEQIAAFDAKRD-------ELIAAFKAQQQETSLLSKS 147
                             +AT  + I   +  RD       ++I A  A      +L+  
Sbjct: 246 QAASKAALDKMTTLGVSMLATSNDLITRQNKSRDADSAKSVQMIIAATALAMVLGILAAW 305

Query: 148 ALIGKLLNKAQMLSQII--ASQAGLSRDSQSDLR---------------QLSELITSVTP 190
            +  ++    Q   +++   +   LSR+   D +                L EL+  +  
Sbjct: 306 VITRQITTPLQETLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELVGGIRD 365

Query: 191 LVTQTLGEGRAMGAYSLGQGFLNSSSSTRFDELLQQLEKIQAEYGLKLQDALGSSKAAHA 250
            VTQ       + A +       +S     D++   + ++ A      ++A  +S+AA A
Sbjct: 366 GVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEVARNAEEASEAAVA 425

Query: 251 ALDGLAKSSNASLKQGSELFEEQVVMAETLDAPWQDFYDGVSRLMAQTYQLDDATLTFLG 310
           A        +   + G  +  E +   E L +   +  + +  L  ++ ++  + L  + 
Sbjct: 426 A--------DRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQESDKI-GSVLDVIK 476

Query: 311 QQLEQRLAQNRTHMVVLVSALSAV--------FLLIFYLYAGFYASTRTTLRRLGAMMDK 362
              EQ      T+++ L +A+ A         F ++          T+ +   + A++ +
Sbjct: 477 SVAEQ------TNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEALIAR 530

Query: 363 VAAGDMTVTFVAQSRDELG----DLGQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETV 418
           + +G    T V  S  EL     +L +   G++A I   +  +     Q+   A +    
Sbjct: 531 LQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQSAT 590

Query: 419 SAQSNQAVSGQRMQIEQVATAMNQMSSTAQEVAR 452
           + + N+++   R   EQ + A  + ++++ E+AR
Sbjct: 591 AEEINRSIINVRDVSEQTSAASEETAASSVELAR 624