Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  241 bits (614), Expect = 1e-67
 Identities = 197/686 (28%), Positives = 344/686 (50%), Gaps = 54/686 (7%)

Query: 21  FSLVSVLFLLPMLATNYYLVRDSWREYQGTRVELQSLDL--LGSSLALRRDLETLNNQVQ 78
           FS+V++L ++  +A+   LV +     + + + LQ L L  L SS  L ++L     Q+ 
Sbjct: 13  FSVVTLLLIVLGVAS---LVTND--NIKSSTLVLQDLSLPALKSSNGLTQNLALQEKQLL 67

Query: 79  INATLGQSGKAGDLEGKISALEQSVLSRLQSLNAMATEPE-----QI----AAFDAKRDE 129
           +     QS +   +  + ++L +  ++ L  LN +    E     QI    A + +  D 
Sbjct: 68  VAFHSKQSKELPQVRSQFTSLSKGFITELDQLNRIIQGHEDNLGGQIKSLRANYQSFNDN 127

Query: 130 LIAAFKAQQQETSLLSKSALIGKLLNKAQMLSQIIASQAGLSRDSQSDLRQLSELITSVT 189
            +   +A++Q  SL ++ +L+  L            S  G + D+ S L  L +L TS  
Sbjct: 128 SLKMMQAREQ--SLQTQESLVDNL-----------ESLEGAADDTASLLLDLIDLETSQD 174

Query: 190 PL-----VTQTLGEGRAMGAYSLGQGFLNSSSSTRFDELLQQLEKIQAEYGLKL------ 238
           P       T +  +       +     +N+   ++++ +L++L+ I +E   KL      
Sbjct: 175 PTEREIAATASNIDNSFSNLITSSYDLVNAKEKSKYETILKELDYIISEAQNKLEYVSRH 234

Query: 239 ------QDALGSSKAAHAALDGLAKSSNASLKQGSELFEEQVVMAETLDAPWQDFYDGVS 292
                 Q+AL +     + +  +    ++ LK+  +  +  +  ++ L+   +     V+
Sbjct: 235 WEGVIDQEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQLLNTV-ESNATAVN 293

Query: 293 RLMAQTYQLDDATLTFLGQQLEQRL--AQNRTHMVVLVSALSAVFLLIFYLYAGFYASTR 350
           + M    +  ++T   +  +    +  A  +T  +VL++ + AV + I  +        +
Sbjct: 294 QSMGSLNKAIESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVI-----RPLK 348

Query: 351 TTLRRLGAMMDKVAAGDMTVTFVAQSRDELGDLGQVFNGTVAKIHDLIERVGHTVSQVEL 410
            +L ++   ++ +A+G++T        DE  +L +  N  V  +  LI+ +    +Q+  
Sbjct: 349 NSLDKVNNALNILASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAA 408

Query: 411 QAGQVETVSAQSNQAVSGQRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVS 470
            A +   ++AQ+   +  Q+ Q++QVATA  Q+SS+A +V+ SA  A++     ++E   
Sbjct: 409 AAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQH 468

Query: 471 GRSLVQSQQGSIARLATEIDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIE 530
            R++    + +I  LA E+ ++ QVIN++ +DS SI S+L+VI+ IAEQTNLLALNAAIE
Sbjct: 469 MRAIADENKRTILALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIE 528

Query: 531 AARAGEQGRGFAVVADEVRTLARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGT 590
           AARAGEQGRGFAVVADEVR+LA RTQ ST+EI+QMI  LQ G   AV  M      A+  
Sbjct: 529 AARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSC 588

Query: 591 VGQSERVQQALENILGAVGMIVDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGEHAAEGA 650
           V ++E+   ALE+I  AV    D    IA A ++Q  V+  + + +  I    E  A GA
Sbjct: 589 VEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGA 648

Query: 651 YQTEAASRQLSLQVIELKQLIGAFRV 676
            QT  +S Q++    EL+  +G F+V
Sbjct: 649 DQTAQSSHQVAQLAEELQASVGEFKV 674