Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  232 bits (591), Expect = 5e-65
 Identities = 160/428 (37%), Positives = 227/428 (53%), Gaps = 15/428 (3%)

Query: 253 DGLAKSSNASLKQGSELFEEQVVMAETLDAPWQDFY-DGVSRLMAQTYQLDDATLTFLGQ 311
           D  A S    + QG+E     V+    LD      Y  G+     +T+ + D  L     
Sbjct: 218 DTSASSELNKVMQGTE-----VIRTIDLDGKSYALYRHGMQDYSGKTFGVLDIALD--RS 270

Query: 312 QLEQRLAQNRTHMVVLVSALSAVFLLIFYLYAGFYAS--TRTTLRRLGAMMDKVAA-GDM 368
             EQ ++  R  ++++      +  LI    A F A   TR       A+ D     GD+
Sbjct: 271 HSEQAMSDIRFKLIMI----GFIAFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDL 326

Query: 369 TVTFVAQSRDELGDLGQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSG 428
           T     +S+DE+  L   FN    KIH  + +V  + S +   A ++  ++ ++ Q    
Sbjct: 327 TRRIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKR 386

Query: 429 QRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATE 488
           Q ++ EQVATAMN+M++T QEVA +A  A  +A   ++ T  G+ LV+    +I+ LA E
Sbjct: 387 QHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADE 446

Query: 489 IDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 548
           I  + + IN+L  ++  I SVL VI++IA+QTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 447 IAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEV 506

Query: 549 RTLARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAV 608
           RTLA RTQ ST EI+QMI  LQ    + V  M +S       V       +ALE I  AV
Sbjct: 507 RTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAV 566

Query: 609 GMIVDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELK 668
             I   N QIA+A  +Q AV+ +I++N+  IN    +A E A QT  A  +L+   + L 
Sbjct: 567 STISQMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMRLT 626

Query: 669 QLIGAFRV 676
            L+  FR+
Sbjct: 627 TLLAQFRI 634