Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (580), Expect = 9e-64
 Identities = 138/367 (37%), Positives = 206/367 (56%), Gaps = 4/367 (1%)

Query: 314 EQRLAQNRTHMVVLVSALSAVFLLIFYLY-AGFYASTRTTLRRLGAMMDKVAAGDMTVTF 372
           +Q +    T +   +SA+    L+IF L     +      L R+   ++ +A GD  +T 
Sbjct: 264 KQEIMSQATSLAWWMSAVGVGLLVIFGLVLVAIFKMQFKDLERVALALNDIAEGDGDLTV 323

Query: 373 ---VAQSRDELGDLGQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQ 429
               A S DE+G L   FN  V ++H +I R+ +   Q+E QA      +A ++Q +  Q
Sbjct: 324 RIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQ 383

Query: 430 RMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEI 489
           + ++  VATA+ +M+S  +E+A +A     +A +    +  G+  V   Q SI  LA E+
Sbjct: 384 QDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEV 443

Query: 490 DQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 549
           D + ++I++L   SQ I+S+L  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR
Sbjct: 444 DTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 503

Query: 550 TLARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVG 609
            L++RT  ST+EI+ MI  LQ     AVK+M  SHDMA  +V  +    ++L  I  A+ 
Sbjct: 504 VLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAIN 563

Query: 610 MIVDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQ 669
            I D   QIA A E+QT+V  +I++N   I    E+ +  A      S++L+     L+Q
Sbjct: 564 EISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSAMVQSQELAHLAASLQQ 623

Query: 670 LIGAFRV 676
            +  F++
Sbjct: 624 EVSRFKL 630