Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  220 bits (561), Expect = 1e-61
 Identities = 133/357 (37%), Positives = 200/357 (56%), Gaps = 5/357 (1%)

Query: 323 HMVVLVSALSAVFLLIFYLYAGFYASTRTTLRRLGAM---MDKVAAGDMTVTFVAQSRDE 379
           H  VL+   + + +L+  + A  Y  +R+ ++ L  +   M  +A G++T       +DE
Sbjct: 179 HEYVLMGGTTLILILL--MAALGYIISRSIVQPLDQVNNAMQIIATGNLTPQLAVTGKDE 236

Query: 380 LGDLGQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQVATA 439
           L  L    N ++A I   +    H+   V   A ++ + + ++NQAV+ QR Q+ Q+ATA
Sbjct: 237 LAALAHNINQSMASIRTALAEANHSADNVSQAASRIASTAEETNQAVNNQRDQLAQLATA 296

Query: 440 MNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQVINQL 499
           MN+MS+T  +VA +A +          E   G   V +    I  LA E++Q+ Q +N+L
Sbjct: 297 MNEMSATIADVANNAESTAKDTKEATREAGLGDKDVHASVDGIHALAKEVEQATQQVNKL 356

Query: 500 ATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARRTQHST 559
             +   IS V  VI +I++QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT+ ST
Sbjct: 357 KEEIMQISEVTAVISAISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTRQST 416

Query: 560 EEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQNQQIA 619
           EEI+  IS LQ    +A  AM +S D+A  +V QS +    L  I+  +  + D   QIA
Sbjct: 417 EEIQNTISLLQQRAVSAANAMDTSRDLAEKSVDQSTKAGNDLSLIVTHIKHVSDMATQIA 476

Query: 620 AAVEQQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAFRV 676
            A E+Q+AVA ++++N+  IN +    +E A      S  L+   + L   + AF++
Sbjct: 477 TAAEEQSAVAEEMNRNVCGINSSALEVSESATYLAQESESLAELSLNLNNKLAAFKL 533