Pairwise Alignments

Query, 187 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase from Pseudomonas simiae WCS417

Subject, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

 Score =  197 bits (502), Expect = 7e-56
 Identities = 99/177 (55%), Positives = 122/177 (68%), Gaps = 1/177 (0%)

Query: 6   TSGWCKGIRHCPSPNYNERPAGE-ISLLVVHNISLPPAQFATGKVQEFFQNRLDVTEHPY 64
           + GW +  R  PSP+ + R   E ISLLVVHNISLPP QF    +++FF   LD  +H +
Sbjct: 4   SQGWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSF 63

Query: 65  FEGIADLRVSAHFLIERDGAVTQFVSCLDRAWHAGISQFEGRDTCNDFSLGVELEGTDDQ 124
           F+ IA +RVSAH +I RDG V QFV    RAWHAG+S F GR  CND+S+G+ELEG+D  
Sbjct: 64  FKVIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFV 123

Query: 125 PFTDAQYASLTNLTRQLLAAYPDITPQRICGHSDIAPGRKTDPGPAFDWTRFRSALQ 181
           P+TDAQY +LT LT+ L+  YP IT  RI GH  IAP RKTDPG  FDW RFR+ L+
Sbjct: 124 PYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGLK 180