Pairwise Alignments

Query, 187 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase from Pseudomonas simiae WCS417

Subject, 181 a.a., AmpD protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  212 bits (539), Expect = 4e-60
 Identities = 98/175 (56%), Positives = 123/175 (70%)

Query: 8   GWCKGIRHCPSPNYNERPAGEISLLVVHNISLPPAQFATGKVQEFFQNRLDVTEHPYFEG 67
           GW    R C SP++N+RP GEISLLV+HNISLP   F    + + FQ  LD      F  
Sbjct: 6   GWFTAARRCESPHFNQRPFGEISLLVIHNISLPAGCFGLPYIDQLFQGCLDTNADNSFAD 65

Query: 68  IADLRVSAHFLIERDGAVTQFVSCLDRAWHAGISQFEGRDTCNDFSLGVELEGTDDQPFT 127
           +A L+VSAHFLI RDG   Q+VSC DRAWHAG+S++  R+ CNDFS+G+ELEGTD +P+T
Sbjct: 66  LAGLKVSAHFLIRRDGECVQYVSCDDRAWHAGVSRYGERENCNDFSIGIELEGTDTEPYT 125

Query: 128 DAQYASLTNLTRQLLAAYPDITPQRICGHSDIAPGRKTDPGPAFDWTRFRSALQD 182
            AQY  L  LT+ LLA Y  ++ +RI GH DIAP RKTDPGP+FDW R+ + L+D
Sbjct: 126 AAQYQQLVELTQALLAQYSSLSAERIVGHCDIAPVRKTDPGPSFDWERYLTKLRD 180