Pairwise Alignments

Query, 402 a.a., type II secretion system protein F from Pseudomonas simiae WCS417

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  303 bits (777), Expect = 5e-87
 Identities = 166/396 (41%), Positives = 253/396 (63%), Gaps = 5/396 (1%)

Query: 8   YAWEGINRKGRRVSGQTTGHNPALVKAQLRKQGICPGHVRKKS-PVLSSLAASITSTDIT 66
           Y W+GIN  G++VSGQ    +   V+ +L+ Q I    ++K S  +L+ L   + S DIT
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71

Query: 67  LFTRQLATLLKAGIPLLQAFDIIAEGFDNRALRERVQGLKQAIEAGTSLAEALRKQPRCF 126
           + TRQLAT+L  G+P++QA  ++ +      ++  +  + +++EAGT L++A+R     F
Sbjct: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131

Query: 127 DELYCNLVAAGEQAGALETLLERVAIHREKSEQLKTRIKKAMTYPITVLVVASLVTGVLL 186
           D LY +LV  GE +G L  + ER+A +REKSEQL+ ++ KA+ YP  V++VA  V+ ++L
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 187 VHVVPQFQNLFAGVDGKLPGFTLQVIGLSEFMQ--KAWWAVALGGLAGGLGLREAYRRLA 244
             V+P+F+++F G   +LP FT QV+ LS ++Q    W  +A+   A   GL+   +   
Sbjct: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIA--AAIFGLKALRKNSF 249

Query: 245 DFRLWLDSCLLKAPVAGKLLSKSAVARFARTLSTTFAAGVPLLQALDSVAGAAGSGPFRR 304
             RL      LK P+ G +L+K+++A+F+RTL+T+FAAG+P+L +L + A  +G+  F  
Sbjct: 250 QIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFET 309

Query: 305 AIEQMRRDVATGMPLNQSMLTSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNL 364
           AI ++ RD A GMP+  +M  +  FP M +QM  IGEESG LD ML KVA  YE +VDN 
Sbjct: 310 AINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNT 369

Query: 365 VDHLTHLMEPLIMVVLGGIVGALVIAMYLPVFQLGS 400
           VD+L  ++EPLI+V LG +VG LV+AMYLP+F L S
Sbjct: 370 VDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMS 405