Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

 Score =  119 bits (299), Expect = 7e-32
 Identities = 89/317 (28%), Positives = 156/317 (49%), Gaps = 27/317 (8%)

Query: 10  EVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVIRPRDIVHGGAILELTA- 68
           ++  ++ GQR+D           +S +   ++ G + V+   ++    +  G ++ +   
Sbjct: 12  DIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPV 71

Query: 69  -------EQEAQGEWVAQDIELD--IVYEDDDILVINKPAGLVVHPAAGHADGTL--LNA 117
                  E       +++  EL+  IVYEDD +L++NKP+G  VH  +G   G +  L A
Sbjct: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRA 131

Query: 118 LLHHVPDIINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGV 177
           L      +       +VHR+D+DT+G+++VAK   A   L  Q + ++V + Y  +V+G 
Sbjct: 132 LRPQARFL------ELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGH 185

Query: 178 VVAGGKI-NAPIGRHGQQRQRMAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIR 236
             A  K+ NAP+ ++ +    + V   GK + + +R+LE+F   T V+    TGRTHQIR
Sbjct: 186 WDAECKVVNAPLLKN-EVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIR 244

Query: 237 VHMAHINFPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSW 296
           VH  ++  P+  D  YG R R     +   ++      R  LHA  ++  HP S K++  
Sbjct: 245 VHTQYMGHPIAWDDRYGDR-RFDAYTAQFGIE------RLFLHAANIQFVHPASEKKLEI 297

Query: 297 ESPLPDDLVWLLSLLKQ 313
            +PL   L   L+ ++Q
Sbjct: 298 HAPLEAHLEQALTKMRQ 314