Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  352 bits (903), Expect = e-102
 Identities = 176/315 (55%), Positives = 226/315 (71%), Gaps = 1/315 (0%)

Query: 1   MSDKIELRAEVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVI-RPRDIVH 59
           M+ +IEL   V     GQRLDQ  A+LF + SRSRL  W+ +G++ V+G VI +PR  V 
Sbjct: 1   MAHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60

Query: 60  GGAILELTAEQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALL 119
           GG ++ + AE E +  W AQD+ L+IVYEDDDI+VINKP   VVHP AG AD T+LNALL
Sbjct: 61  GGEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120

Query: 120 HHVPDIINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVV 179
            H   I  VPR GIVHRLDKDTTGLMVVAKT+ AQT+LV  LQ R V+R YE IVIG + 
Sbjct: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180

Query: 180 AGGKINAPIGRHGQQRQRMAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHM 239
           AGG I+ PIGRH  +R  M+V   GK AV+HYRV E FR HT +R++LETGRTHQIRVHM
Sbjct: 181 AGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240

Query: 240 AHINFPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESP 299
           A++  PL+GD AYGGR RIP  A+  + + +++F RQALHA  L+ +HP +G+ + + +P
Sbjct: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300

Query: 300 LPDDLVWLLSLLKQD 314
           +PDD+V +   L++D
Sbjct: 301 VPDDMVEMTLALRED 315