Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 313 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  213 bits (542), Expect = 5e-60
 Identities = 143/327 (43%), Positives = 190/327 (58%), Gaps = 26/327 (7%)

Query: 1   MSDKIELR-AEVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVI-RPRDIV 58
           MSD+++L   EVPSE    RLD+  AQ +   SR+RL   I  G+L V+G V  + R   
Sbjct: 1   MSDRLQLEITEVPSE----RLDRWLAQQWPHLSRARLQKLIAAGQLRVNGEVCDQKRWQP 56

Query: 59  HGGAILELTAEQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNAL 118
             G  LEL            ++I LDI+YED D+L++NK  G+VVHPAAGH  GTL++AL
Sbjct: 57  RLGDRLELEMPPTEAIALAPEEIPLDILYEDADLLIVNKAVGMVVHPAAGHDTGTLVHAL 116

Query: 119 LHHVPD----IINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIV 174
           L H  D    I    R GIVHRLDKDTTG MVVAKT  A   L  Q++ ++  R Y  +V
Sbjct: 117 LAHCGDSLTGIGGEQRPGIVHRLDKDTTGAMVVAKTEAALLSLQDQIRQKTAQREYLGVV 176

Query: 175 IGVV-VAGGKINAPIGRHGQQRQRMAVM---EGGKQAVSHYRVLERFRSHTHVRVKLETG 230
            G      G++  PIGRH + R+RMAV+    GG+ A++H++V ER  ++  +  +L TG
Sbjct: 177 FGSPRQDSGQVEEPIGRHLRDRKRMAVVPIERGGRWALTHWQVRERLGNYALLHYRLATG 236

Query: 231 RTHQIRVHMAHINFPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHARFLELDHPTS 290
           RTHQIRVH  H+  PLVGDP YG    +             N   QALHA  L L HP +
Sbjct: 237 RTHQIRVHSHHMGHPLVGDPLYGNGRSLG-----------VNLQGQALHAWRLSLQHPRT 285

Query: 291 GKRMSWESPLPDDLVWLLSLLKQDREA 317
           G+ ++ E+PLP +   LL +L+ DR A
Sbjct: 286 GEVIAVEAPLPAEFQRLLRVLR-DRSA 311