Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 343 a.a., ribosomal large subunit pseudouridine synthase from Sinorhizobium meliloti 1021

 Score =  222 bits (566), Expect = 9e-63
 Identities = 134/320 (41%), Positives = 190/320 (59%), Gaps = 30/320 (9%)

Query: 19  RLDQVAAQLFA-EHSRSRLSAWIKDGRLTVDGAVI-RPRDIVHGGAILELTAEQEAQGEW 76
           RLD    +  A E SR+R+ + I+ G ++++GA +  P+  VH G    +   +    E 
Sbjct: 24  RLDAFLTEALAGEFSRNRIKSLIEQGAVSINGATVTEPKRKVHPGDSFRIALPEPEDPEP 83

Query: 77  VAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIIN----VPRCG 132
             + I LD++YED D++V+ KPAGLVVHP AG+  GTL+NAL+HH  D ++    V R G
Sbjct: 84  KGEAIPLDVLYEDADLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPG 143

Query: 133 IVHRLDKDTTGLMVVAKTIQAQTQLVTQL----QSRSVSRIYECIVIG-VVVAGGKINAP 187
           IVHRLDKDT+G+MVVAK   A   L  Q     ++  + R Y  +V G      GKI+AP
Sbjct: 144 IVHRLDKDTSGVMVVAKNDAAHRHLSDQFADHGRNGPLERAYRAVVWGRPRQLKGKIDAP 203

Query: 188 IGRHGQQRQRMAVME---GGKQAVSHYRVLERFRSH-------THVRVKLETGRTHQIRV 237
           +GR G + +R    E     ++A++HY V+ER+          + V   LETGRTHQIRV
Sbjct: 204 LGRAGDRTKRAVKREDSDDAREAITHYEVVERYHEKPDGTSLASTVECHLETGRTHQIRV 263

Query: 238 HMAHINFPLVGDPAYGGRFR-----IPPAASATMVDSLKNFPRQALHARFLELDHPTSGK 292
           HMAHI  PL+GDP YG  FR     +P  A A    ++  FPRQALHA  L+ +HP +G+
Sbjct: 264 HMAHIGHPLIGDPDYGAAFRTKANLLPEPARA----AVNRFPRQALHAFMLQFEHPATGE 319

Query: 293 RMSWESPLPDDLVWLLSLLK 312
            M +E+P+P D+  L++ L+
Sbjct: 320 TMHFETPVPADMQELIAALR 339