Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

 Score =  134 bits (337), Expect = 3e-36
 Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 39/318 (12%)

Query: 18  QRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVIRPRDIVHGGAILELT---------- 67
           QR+D+   +LF   S+ R+    + G L +DG  ++    V  G ++ +           
Sbjct: 11  QRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVPPLGASDLKPA 70

Query: 68  -AEQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAG---HADGTLLNALLHHVP 123
            A      E  A+ I   ++Y+DD ++V+NKPAGL V   +G   H DG  L+A L    
Sbjct: 71  EAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDG--LSAALQF-- 126

Query: 124 DIINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGV------ 177
           D    PR  +VHRLDKDT+G++V+A+T  A   L    + R+  +IY  +V GV      
Sbjct: 127 DAEEKPR--LVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGVPTPYLG 184

Query: 178 VVAGGKINAP-IGRHGQQRQRMAV-------MEGGKQAVSHYRVLERFRSH-THVRVKLE 228
            +  G + AP  G+ G+  + +A+         G K++ +HY  L R  S    V ++  
Sbjct: 185 EIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWVAMEPI 244

Query: 229 TGRTHQIRVHMAHINFPLVGDPAYGG--RFRIPPAASATMVDSLKNFPRQALHARFLELD 286
           TGRTHQ+R HMA I  P+ GD  YGG  +  +     A +   +    +  LH R +  +
Sbjct: 245 TGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISK--KLHLHCRRMAFE 302

Query: 287 HPTSGKRMSWESPLPDDL 304
           HPT+ K +S  +PLPD +
Sbjct: 303 HPTTKKPLSITAPLPDHM 320