Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 298 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis JJ

 Score =  128 bits (321), Expect = 2e-34
 Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 16/236 (6%)

Query: 79  QDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRCGIVHRLD 138
           +++ L+I+YEDDD+L+++KP  +VVHP       TL NA+ +H        +   V+RLD
Sbjct: 78  ENLALNIIYEDDDLLIVDKPKNMVVHPTKNVLSKTLANAVSNHQKINNQNYKIRFVNRLD 137

Query: 139 KDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIG-VVVAGGKINAPIGRHGQQRQR 197
            DTTGL+++AK   +  +L  Q+    + +IY  +V G + +  G I   I  +    +R
Sbjct: 138 MDTTGLLIIAKDPYSHQRLAKQMDEGILEKIYIAVVNGHLDLKEGIIEDSIDLNDDGIKR 197

Query: 198 MAVMEGGKQAVSHYRVLERFRSHTHVRVKLETGRTHQIRVHMAHINFPLVGDPAYGGRFR 257
             +   GK + + Y+V+E  ++ + + +KL TGRTHQIRVH++     ++GD  YG    
Sbjct: 198 -ELSNVGKISKTKYKVIEELKNASILEIKLLTGRTHQIRVHLSSTGNYIIGDTLYG---- 252

Query: 258 IPPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESPLPDDLVWLLSLLKQ 313
                     +      RQALH+  L   HP + ++M + S LPDD+  L+  LK+
Sbjct: 253 ----------EISNLIERQALHSYILRFIHPITKEKMEFSSKLPDDMENLIKNLKE 298