Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

Subject, 347 a.a., pseudouridine synthase, RluA family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  212 bits (539), Expect = 1e-59
 Identities = 141/324 (43%), Positives = 187/324 (57%), Gaps = 31/324 (9%)

Query: 19  RLDQVAAQLFAEH---SRSRLSAWIKDGRLTVDGAVIR-PRDIVHGGAILELTAEQEAQG 74
           RLD+  A+   E    SRSRL   I+ G +     V+  P+  V  G +L L     A+ 
Sbjct: 22  RLDRALARDVPEGLGLSRSRLVKLIEAGDVRRGAEVLASPKARVAAGDVLTLRLGAPAEV 81

Query: 75  EWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIIN----VPR 130
             VA+ I LD+++ED D++V+NKPAG+VVHPA G   GTL+NAL+HH  D ++      R
Sbjct: 82  PLVAEAIPLDVIFEDADLIVVNKPAGMVVHPAPGSPAGTLVNALMHHCGDSLSGIGGEKR 141

Query: 131 CGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVA---------- 180
            GIVHR+DKDT+GL+VVAK+  A   L  Q  + SV RIY+ +V GV  A          
Sbjct: 142 PGIVHRIDKDTSGLLVVAKSDHAHQGLAAQFAAHSVERIYDALVHGVPEASDPRLRGLPM 201

Query: 181 -----GGK--INAPIGRHGQQRQRMAVM-EG-GKQAVSHYRVLERF---RSHTHVRVKLE 228
                GG   + A + RH   RQR AV+ EG G+ AV+  RV  RF       H+   LE
Sbjct: 202 VRFEPGGVLCLRASLARHRTDRQRQAVVAEGQGRHAVTRARVEARFGDPAGVAHLACWLE 261

Query: 229 TGRTHQIRVHMAHINFPLVGDPAYGGRFRIPPAA-SATMVDSLKNFPRQALHARFLELDH 287
           TGRTHQIRVH+AHI   L+GDP YGGR R+   A S   + + + FPRQALHAR L   H
Sbjct: 262 TGRTHQIRVHLAHIGHGLLGDPVYGGRKRLSAKAFSPQALAAAEAFPRQALHARTLGFVH 321

Query: 288 PTSGKRMSWESPLPDDLVWLLSLL 311
           P +G  +S+ +P+P D+  L + L
Sbjct: 322 PVTGAALSFAAPMPADMAALWAAL 345