Pairwise Alignments

Query, 512 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 525 a.a., lipid II flippase MurJ from Vibrio cholerae E7946 ATCC 55056

 Score =  391 bits (1005), Expect = e-113
 Identities = 212/510 (41%), Positives = 310/510 (60%), Gaps = 7/510 (1%)

Query: 3   LLKSLAAVSSITMISRVLGFVRDTLLARIFGASMATDAFFIAFKLPNLLRRIFAEGAFSQ 62
           LLKS   VS++T+ISRVLG VRD ++A + GA  + D FF A ++PN LRR+FAEGAFSQ
Sbjct: 10  LLKSGIIVSAMTLISRVLGLVRDVVVANLMGAGASADVFFFANRIPNFLRRLFAEGAFSQ 69

Query: 63  AFVPILAEYKTQQGEEATRTFIAYVSGLLTLVLMLVTLLGMLAAPWVIWATAPGF----- 117
           AFVP+L EY        TR  IA  SG L +++ +VTL+G+L +  V      G+     
Sbjct: 70  AFVPVLTEYHASGDINKTRDLIARASGTLGVLVTIVTLIGVLGSGAVTALFGAGWFLDWL 129

Query: 118 --ANTPEKFALTTDLLRVTFPYILLISLSSLAGAILNTWNRFSVPAFVPTLLNVSMIIFA 175
                  KF L + LL++TFPY+  I+  +L+GAILNT  +F+V +F P  LNV MI+ A
Sbjct: 130 NGGPAAGKFELASLLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNVMMILCA 189

Query: 176 LFLTPYFDPPVMALGWAVLAGGLAQLLYQLPHLKKIGMLVLPRLNLKDTGVWRVMRNMLP 235
            +L+P  + P + L   V  GGL Q L+QLP L K G+LV P+   KD GV ++   M+P
Sbjct: 190 WYLSPNLEQPEVGLAIGVFLGGLVQFLFQLPFLIKAGVLVRPKWGWKDPGVVKIRTLMIP 249

Query: 236 AILGVSVSQISLIINTAFASLLVSGSVSWMYYADRLMELPSGVLGVALGTILLPTLARTY 295
           A+ GVSVSQI+L+ ++  AS L +GS+SW+YY+DRL+E P G+ G+A+ T++LP L+R +
Sbjct: 250 ALFGVSVSQINLLFDSFVASFLQTGSISWLYYSDRLLEFPLGLFGIAIATVILPALSRKH 309

Query: 296 ASKDRQEYSRILDWGLRLCFVLVLPCALALGILAEPLTVALFQYGQFDAHDALMTQHALI 355
                  ++  +DWG+R+   L +P  L L +LA+P+ + LF  G+F   D     ++L+
Sbjct: 310 VDAHSDGFAHTMDWGIRMVTFLGIPAMLGLMVLAKPMLMVLFMRGEFTPSDVEQASYSLL 369

Query: 356 AYSVGLLGIIVIKVLAPGFYAQQNIRTPVKIAIFTLIVTQLLNLVFIGPLAHAGLALAIS 415
           AYS GLL  ++IKVLAPG+Y++Q+ +TPV+  I  ++   +LN +F     + GLA+A S
Sbjct: 370 AYSSGLLSFMLIKVLAPGYYSRQDTKTPVRYGIIAMVSNIVLNAIFAWFYGYVGLAVATS 429

Query: 416 AGACINAGLLFYQLRKQQMFQPQPGWGLFALKLLVAVGVMSAVLLGLMHFMPAWDEGHML 475
             A +N  LL+  L  Q ++        F  +L +A  VM+  LL  +  M  W    + 
Sbjct: 430 MSAFLNMALLYRGLHLQGVYHLTRKTVWFVARLAMAGAVMTGALLWQLDTMATWLSWGIS 489

Query: 476 ERFLRLGVLVVAGVVVYFGMLLAQGFRLRD 505
           +R L L  L+  GV  Y  +LL  G RL+D
Sbjct: 490 QRALTLTGLIGLGVASYLAILLLLGVRLKD 519