Pairwise Alignments

Query, 308 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  210 bits (534), Expect = 6e-59
 Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 20/311 (6%)

Query: 10  IEDITFSDCPSIETT---INNTAALDIDILLLGETGTGKDTLAQHIHYLSQR-KGNFVAV 65
           +E I    C SI+     I   AA+D ++++ GETG GK+ +AQ +H  S+R +G FVA+
Sbjct: 141 LEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQCLHQASERQRGQFVAI 200

Query: 66  NCAAIPESLAESQLFGVNSGAYTGAMQSRAGFVEAAHLGTLYLDEIDSMPLTLQAKLLRV 125
           NC AIPE+L ES+LFG  +GA+TGA++ R G +E A  GTL+LDEI+SMPL +Q K+LRV
Sbjct: 201 NCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDEIESMPLAMQVKVLRV 260

Query: 126 LESRGVERLGSTRFIPVDMRVIASAQRVLHEMVEQGTFRRDLYFRLNVVSIHLPALRDRR 185
           L+   VER+GS + I +D+RVIA+A+  L +  E   FR+DL++RLNV  ++LP LR+R 
Sbjct: 261 LQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFYRLNVAQLYLPPLRERG 317

Query: 186 ARIIPMFLHMIQQEADHFKLAYPPPPDSQLLQQLLCHPWKGNVRELRSTAKRFVL----- 240
             I+ +F H   Q     K  +    ++  L  LL + W GNVRELR+ A R+ L     
Sbjct: 318 DDILLLFEHFCVQ----VKPTWRSLSEADRL-ALLTYRWPGNVRELRNVALRYALDDSIS 372

Query: 241 -GLPPLSATVITRQEIEMG--LKARMHQMEKSLIEECLRQNSHCVGSAATELGVPKRTLY 297
            G    S   +T +E   G  L  ++H  E+ +I + L ++   +     EL +P+RTL 
Sbjct: 373 VGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNISEVMKELDLPRRTLN 432

Query: 298 HRIKHLGVSLG 308
            +++  G+  G
Sbjct: 433 QKMQKFGLLRG 443