Pairwise Alignments

Query, 308 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (468), Expect = 3e-51
 Identities = 102/233 (43%), Positives = 152/233 (65%), Gaps = 6/233 (2%)

Query: 12  DITFSDCPSIE--TTINNTAALDIDILLLGETGTGKDTLAQHIHYLSQRK-GNFVAVNCA 68
           D   +D  S++     +  A  D ++++LG +G+GK+ ++++IH  S RK G F+A+NCA
Sbjct: 130 DAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCA 189

Query: 69  AIPESLAESQLFGVNSGAYTGAMQSRAGFVEAAHLGTLYLDEIDSMPLTLQAKLLRVLES 128
           AIP+++ E+ LFG   GA+TGA+Q+  G  E A  GT+ LDEI  M L LQAKLLRVL+ 
Sbjct: 190 AIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQE 249

Query: 129 RGVERLGSTRFIPVDMRVIASAQRVLHEMVEQGTFRRDLYFRLNVVSIHLPALRDRRARI 188
           R VERLGS + I +D+RV+A++ R L + V+ G FR DLY+RLNV  +  PAL +R+  I
Sbjct: 250 REVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDI 309

Query: 189 IPMFLHMIQQEADHFKLAYPPPPDS-QLLQQLLCHPWKGNVRELRSTAKRFVL 240
            P+  H+I++     KL  P P  +   + +LL +PW GNVREL +  +R ++
Sbjct: 310 EPLANHLIERHCK--KLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALI 360