Pairwise Alignments

Query, 308 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  217 bits (552), Expect = 5e-61
 Identities = 122/284 (42%), Positives = 179/284 (63%), Gaps = 3/284 (1%)

Query: 20  SIETTINNTAALDIDILLLGETGTGKDTLAQHIH-YLSQRKGNFVAVNCAAIPESLAESQ 78
           ++  TI   A    DILL GETGTGK+ +A+ +H   S+R+ NFVA+NC A+PE+L ES+
Sbjct: 153 TLRDTIAQVADTQADILLFGETGTGKELVARSLHEQSSRREQNFVAINCGAVPENLIESE 212

Query: 79  LFGVNSGAYTGAMQSRAGFVEAAHLGTLYLDEIDSMPLTLQAKLLRVLESRGVERLGSTR 138
           L+G   GA+TGA   R G  E A  GTL+LDEI+SMP+  Q +LLRVL+ R +ER+GS  
Sbjct: 213 LYGHEKGAFTGADSRRVGKFEHAQGGTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNE 272

Query: 139 FIPVDMRVIASAQRVLHEMVEQGTFRRDLYFRLNVVSIHLPALRDRRARIIPMFLHMIQQ 198
            IP+D+RVIA+ +  L +   +G FR+DLY+RLN+V++ +P LR+RR  I  +F H +  
Sbjct: 273 LIPLDIRVIAATKIDLKQAAAEGKFRQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLV 332

Query: 199 EADHFKLAYPPPPDSQLLQQLLCHPWKGNVRELRSTAKRFV-LGLPPLSATVITRQEIEM 257
            A  +  A      S  +Q LL H W GNVRELR+ A+R+V LG     A     +   +
Sbjct: 333 AAARYGKAATALTASD-VQSLLSHDWPGNVRELRNAAERYVLLGKLAQFAESHEPKSKLL 391

Query: 258 GLKARMHQMEKSLIEECLRQNSHCVGSAATELGVPKRTLYHRIK 301
           GL  ++ + EKSL+E+ L +    + +    L +P++TLY +++
Sbjct: 392 GLNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQ 435