Pairwise Alignments

Query, 273 a.a., type III secretion protein from Pseudomonas simiae WCS417

Subject, 295 a.a., Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) from Pseudomonas fluorescens FW300-N2E2

 Score =  288 bits (737), Expect = 9e-83
 Identities = 145/234 (61%), Positives = 184/234 (78%), Gaps = 3/234 (1%)

Query: 11  ICLSLLLQACSERVELHRQLTEQEANEVVAELADKHIRATKVPAKDGVIVVVNATEIARA 70
           + L LLL  C+ER  LH  L+EQ+ANEV+AELA+K++ A+K   KDG+ V+V   ++  A
Sbjct: 9   LLLCLLLTGCNERTVLHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSA 68

Query: 71  VRTLEAVGLPRAARTTLGNTFRKEGVISTPLEERARYIYALSQELETTLSNIDGVIVARV 130
           V+ LEA GLPR +R++LG  FRKEGVISTP+EERARYIYALSQELE+TLS IDGV++ARV
Sbjct: 69  VQVLEAAGLPRRSRSSLGEIFRKEGVISTPMEERARYIYALSQELESTLSQIDGVVLARV 128

Query: 131 HVVLPERVAPGEPVQPASASVFIKHDPRLDPDSIRARVRRMVASSLPGMATAVDNSQKLT 190
           HVVLPERVAPGEPVQPASASVFIKH   LDPDSI  RVR +VAS +PGMA A  N  KL+
Sbjct: 129 HVVLPERVAPGEPVQPASASVFIKHTRALDPDSITPRVRNLVASGIPGMADAAQNPAKLS 188

Query: 191 VVFVPATAYLEQQRLAYFGPFLVPEDDLGFWR---ICVTVSLLAVVFMVSGGMF 241
           VVFVPA  Y E++++AYFGPFL+  DD+G+WR   +  +++LLA++  V  G++
Sbjct: 189 VVFVPAAPYQERRKMAYFGPFLMQADDIGYWRAVTVTASITLLAILMGVLYGLY 242