Pairwise Alignments

Query, 713 a.a., secretin from Pseudomonas simiae WCS417

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score = 92.0 bits (227), Expect = 7e-23
 Identities = 88/368 (23%), Positives = 160/368 (43%), Gaps = 45/368 (12%)

Query: 217 LVVPGVANILRGLLEPRSPSALTGLTQRPASQPAPLTPNVPRLGNPLLSQMLDAN-GTTG 275
           L V G+   + G +   +P     L ++ A + A L   +      L S+++  N     
Sbjct: 217 LQVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEEL----GDLKSEIIKINFAKAS 272

Query: 276 QMAPMPALTSRAPVSTSRIRVEADVRNNAVLIYDLPERQTMYRELITQLDVARKLIEIDA 335
            +A M        + + R  +  D R N++LI +LP+   + RE+I  LD+  K ++I+A
Sbjct: 273 DIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEA 332

Query: 336 IILDIERTQLREFGVNWGFQN---SRFRGG------------------------VNMAPG 368
            I+ ++   L E GV WG  +   S   GG                        VN+A  
Sbjct: 333 RIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLAST 392

Query: 369 TSSQLSI-------DNRDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFN-RTQYI 420
           +++  SI        +      ++ AL+ +  A ++S+P ++T   QPA I+      Y+
Sbjct: 393 SANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYL 452

Query: 421 TPGRDYATILPVTVGT-SLQVVPRVTTGRGVHQIHLAVDIEDGNFDETNPDRDPNHPDVR 479
                 A+ +       SL+V P++T     +++ L + +      ET          + 
Sbjct: 453 ESSSSGASTVAFKKAVLSLKVTPQITPD---NRLVLDLSVTQDRRGETVKTGTGEAVSID 509

Query: 480 RGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKALFSSTERHNNRRERL 539
             ++ TQ ++    ++V+GG      ++   K+PLLGD+P+LG ALF  T     + E L
Sbjct: 510 TQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLG-ALFRRTYEQMGKSELL 568

Query: 540 FILTPRVI 547
             +TP+V+
Sbjct: 569 IFVTPKVV 576