Pairwise Alignments

Query, 713 a.a., secretin from Pseudomonas simiae WCS417

Subject, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

 Score = 60.1 bits (144), Expect = 3e-13
 Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 44/270 (16%)

Query: 321 ITQLDVARKLIEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSSQLSIDN--- 377
           I+Q  + R++I ++A IL++  +   + G+NW    S       +  G+ +Q S  N   
Sbjct: 269 ISQQRMHRQVI-LEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPIT 327

Query: 378 ----------------------RDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFN 415
                                    F A I  +  +G   ++S+P V    NQ AVI   
Sbjct: 328 SVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVG 387

Query: 416 RTQY-------ITPGRDYA------TILPVTVGTSLQVVPRVTT-GRGVHQIHLAV-DIE 460
             +Y       +    D A      T+ P   G SL V P++   G  +  +H AV ++E
Sbjct: 388 TDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVE 447

Query: 461 DGNFDETNPDRDPNHPDVRRGKVSTQAVMQEKRS--LVVGGFHVTDSSDQQKKIPLLGDI 518
                      +   P  R     + +V++ K    +V+GG   +++ DQ  K+P LGD+
Sbjct: 448 QQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDV 507

Query: 519 PLLGKALFSSTERHNNRRERLFILTPRVIG 548
           P LG  LF +T +   + E + +L P V+G
Sbjct: 508 PALGH-LFRNTTKLTQKTELVILLKPTVVG 536