Pairwise Alignments

Query, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

Subject, 376 a.a., flagellar biosynthesis protein FlhB from Vibrio cholerae E7946 ATCC 55056

 Score =  143 bits (360), Expect = 9e-39
 Identities = 109/374 (29%), Positives = 185/374 (49%), Gaps = 27/374 (7%)

Query: 2   SDSGEKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIALFTAETSLQRFQQLMLL 61
           SD  E+   A+ ++L+  ++KGQVA+S+++A +  L             SL  F +++  
Sbjct: 4   SDGQERTEEATPRRLQQAKEKGQVARSKELASVSVLVV--------GAVSLMWFGEILAK 55

Query: 62  PISRLNQPFTRALEEVLFDGLGVFFSFA-----------LLMVGVAITTKLISSWMQFGL 110
            +    Q       E +FD LG  F              L+++       LI +    G+
Sbjct: 56  GLMVAMQRLFELSREEIFD-LGKLFDIIGGSLVNLLLPLLMILSTLFIAALIGAAGVGGI 114

Query: 111 LFAPEALKMDFNRLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGTLINL 170
            F+ EA     +++NP+S +K+MF  Q  + LL S+ K  L+  + + +I  S   L  L
Sbjct: 115 SFSAEAAMPKLSKMNPLSGLKRMFGMQSWVELLKSILKVLLVSGVAFYLIEASQKDLFQL 174

Query: 171 ATSDL-QSYIVALIALFRHLLHVCLGMLLVLALVDLILSKHFFAKRMRMTQVEVVKEYKD 229
           +     Q+   AL  L   +L +   +L+V+A +D+       A++++MT+ EV  EYKD
Sbjct: 175 SLDVYPQNIFHALDILLNFVLLISCSLLVVVA-IDIPFQIWQHAEQLKMTKQEVKDEYKD 233

Query: 230 MEGDPHVKGQRRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLV 289
            EG P VKG+ R L  + AQ      LP   ++D+++ NP HF+VAL Y+      P+++
Sbjct: 234 TEGKPEVKGRIRMLQREAAQRRMMAALP---QADVIITNPEHFSVALRYKQNTDKAPVVI 290

Query: 290 SKGTDDEARKLIRRAKAADVPVIQCVWLARTLY-TKKLGASIPRETLQAVALIYRTLREL 348
           +KG D  A K+   A+  D+ ++    LAR LY T +L   IP     AVA +   + +L
Sbjct: 291 AKGVDHMALKIREIAREYDIAIVPAPPLARALYHTTELEQQIPDGLFVAVAQVLAFVFQL 350

Query: 349 DDEAKRETLELPEL 362
             + +R+  + P+L
Sbjct: 351 -KQYRRKGGQRPKL 363