Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 249 a.a., Flagellar biosynthesis protein FliP from Pseudomonas fluorescens FW300-N2E2

 Score =  141 bits (356), Expect = 9e-39
 Identities = 80/211 (37%), Positives = 130/211 (61%), Gaps = 12/211 (5%)

Query: 9   LILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIM 68
           L + L + AL+ +P  +++ TSF +I+IV  I R A+G+QQ P +  + G+AL  T+FIM
Sbjct: 45  LQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIM 104

Query: 69  APVGYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFML---RNVDPDVLTHLLENTAR 125
           APV   + +   A     +  I       +A  P++ FML   R+ D ++   L + T  
Sbjct: 105 APVFDRVNQD--ALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDLELFMRLSKRTD- 161

Query: 126 LWPAKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185
                      +  L +LVPAFV S+L+  F+IGF+I+IPF++IDL+V+++L+A+GM M+
Sbjct: 162 ------IPSADQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMML 215

Query: 186 SPMTISLPLKLLLFVMVSGWSRLLDSLFLSY 216
           SP+ ISLP K++LFV+V GW+ ++ +L  S+
Sbjct: 216 SPLIISLPFKIMLFVLVDGWALIIGTLAGSF 246