Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 219 a.a., Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score =  148 bits (374), Expect = 7e-41
 Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 16/220 (7%)

Query: 7   DPLILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLF 66
           D  ++AL   A +L+P L+   T +LK  IV +I RNA+G+QQVP +MA+N IAL   +F
Sbjct: 3   DVSLIALLAFA-SLLPFLVAAGTCYLKFSIVFVIVRNALGLQQVPSNMALNAIALMLAVF 61

Query: 67  IMAPV---GYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTH----- 118
           +M PV   G++  +    +  D  SV+NF + G   +   + ++ +  DP++        
Sbjct: 62  VMTPVVKQGHDYYKTEAVAFTDIESVVNFAENG---LGSYKDYLRKYTDPELALFFERAQ 118

Query: 119 -LLENTARLWPAKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLL 177
            + + T   WP     E     L  L+PA+ LS++++ F+IGF +Y+PF+++DL++S++L
Sbjct: 119 AVQDETDADWPV---DEELAPSLFSLLPAYALSEIKSAFKIGFYLYLPFVIVDLVISSIL 175

Query: 178 LALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217
           LALGM M+SP+ IS+P+KL+LFV + GW+ L   L   YL
Sbjct: 176 LALGMMMMSPVIISVPIKLVLFVALDGWALLSTGLVKQYL 215