Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 214 a.a., Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) from Xanthomonas campestris pv. campestris strain 8004

 Score =  178 bits (451), Expect = 8e-50
 Identities = 94/208 (45%), Positives = 134/208 (64%), Gaps = 5/208 (2%)

Query: 11  LALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIMAP 70
           L L V  L L+P   ++ TS+ KIV+VL + RNAIGVQQVPP+M +NG+AL  + F+MAP
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 71  VGYEIAEGIKA-SP-VDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTHLLENTARLWP 128
           VG E  +  +  SP  D S V+  L   RE   P R F+L++         + +  ++WP
Sbjct: 69  VGMEAFKAAQNYSPGADNSRVVVLLDACRE---PFRQFLLKHTREREKAFFIRSAQQIWP 125

Query: 129 AKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188
              A  ++ +DL++L PAF LS+L   F IGFL+Y+ FIVIDL+V+N L+A+G+  V+P 
Sbjct: 126 KDKADTLKPDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPT 185

Query: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSY 216
            +++P KLLLFV + GWS L+  L LSY
Sbjct: 186 NVAIPFKLLLFVALDGWSMLIHGLVLSY 213