Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 245 a.a., flagellar biosynthesis protein FliP from Sinorhizobium meliloti 1021

 Score =  125 bits (313), Expect = 9e-34
 Identities = 72/200 (36%), Positives = 117/200 (58%), Gaps = 4/200 (2%)

Query: 18  LALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIMAPVGYEIAE 77
           L++ P +LI+ TSF + VI   I R+ +G+   P +M +  +AL  T ++MAP  ++ A 
Sbjct: 50  LSVAPGILIMVTSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPT-FDRAW 108

Query: 78  GIKASPVDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTHLLENTARLWPAKMAQEVQR 137
                P+   + I+     +   +P R FM+ N     L   ++         +  E  +
Sbjct: 109 RDGIDPL-LKNEISETDAMQRMSEPFREFMVANTRDKDLQLFIDIAREKGQTVVVDE--K 165

Query: 138 EDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLL 197
            DL  +VPAF++S+++ GFEIGFLI +PF+VIDLIV+ + +A+GM M+ P  ISLP K+L
Sbjct: 166 VDLRAVVPAFMISEIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKIL 225

Query: 198 LFVMVSGWSRLLDSLFLSYL 217
            FV++ GW+ L+ SL  S++
Sbjct: 226 FFVLIDGWNLLVGSLVRSFI 245