Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 264 a.a., Flagellar transport protein FliP (NCBI) from Rhodospirillum rubrum S1H

 Score =  135 bits (341), Expect = 6e-37
 Identities = 79/200 (39%), Positives = 123/200 (61%), Gaps = 9/200 (4%)

Query: 18  LALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIMAPVGYEIAE 77
           L++ P LLI+ TSF +IV+VL I R A+  Q  PP+M +  +AL  T FIMAP  ++ A 
Sbjct: 70  LSVAPGLLIMVTSFTRIVVVLSILRQALATQSTPPNMVMVSLALFMTFFIMAPT-FQQAW 128

Query: 78  GIKASPVDTSSVINFLQTGREAIQPLRAFMLRNV-DPDVLTHLLENTARLWPAKMAQEVQ 136
               SP+     I+  +     + P R FML +V D D+   +  N      A    +V 
Sbjct: 129 DQGLSPL-IQEQISEEEAFTRTVAPFRTFMLAHVRDKDLELFMSFNKET---AAQPSDVS 184

Query: 137 REDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKL 196
            + LI   PAF++S+L+  FEIGFLI++PF+VID++++++L+++GM M+ PM +++P KL
Sbjct: 185 TQALI---PAFMISELRRAFEIGFLIFLPFVVIDMVIASVLMSMGMMMLPPMMLAMPFKL 241

Query: 197 LLFVMVSGWSRLLDSLFLSY 216
           + FV+V GW  ++ SL  SY
Sbjct: 242 IFFVLVDGWYLVIGSLLSSY 261