Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 249 a.a., flagellar type III secretion system pore protein FliP from Ralstonia sp. UNC404CL21Col

 Score =  139 bits (350), Expect = 5e-38
 Identities = 78/211 (36%), Positives = 128/211 (60%), Gaps = 8/211 (3%)

Query: 8   PLILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFI 67
           P+   +F+ +L  +P ++++ +SF +I+IVL + R+A+G Q  PP+  + G+AL  T F+
Sbjct: 45  PVQTLVFLTSLGFLPAIILMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFV 104

Query: 68  MAPVGYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFMLRNV-DPDVLTHLLENTARL 126
           M+PV  ++         D    +   Q    A  PLR FML+   +PD+   +       
Sbjct: 105 MSPVLDKVYTDAYVPLRDNKITVE--QAMDTAATPLRQFMLKQTREPDLALFVKMGNM-- 160

Query: 127 WPAKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVS 186
            PA  + E  +  +  L+PAFV S+L++ F+IGF I+IPF+VID++V+ +L+++GM MV+
Sbjct: 161 -PAIASPE--QTPMRALIPAFVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVT 217

Query: 187 PMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217
           P   SLP K++LFV+V GW  LL SL  S++
Sbjct: 218 PSIFSLPFKIMLFVLVDGWHLLLGSLAQSFV 248