Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 695 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Pseudomonas fluorescens FW300-N2E2

 Score =  917 bits (2370), Expect = 0.0
 Identities = 468/688 (68%), Positives = 561/688 (81%)

Query: 4   LSAINSFLLKVAQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYL 63
           ++ +N    +  +R EV+GA VV+ IVF+ I+PLPT +VD LIA+NICISCLLIVL+LYL
Sbjct: 2   IALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTSVVDALIAINICISCLLIVLSLYL 61

Query: 64  PGPLAFSSFPSILLLTTMFRLALSIATTRLILLEQDAGHIVEAFGNFVVGGNLAVGMVIF 123
           P PLAFSSFP++LLLTT+FRLALS+ATTRLILL+ DAGHIV+AFG+FVVGGNLAVG+VIF
Sbjct: 62  PRPLAFSSFPAVLLLTTLFRLALSVATTRLILLQGDAGHIVQAFGDFVVGGNLAVGLVIF 121

Query: 124 LILTLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSR 183
           LILT+VNFLVITKGSERVAEVAARF+LDA+PGKQMSIDSDLRA LID  +AR +RE+L++
Sbjct: 122 LILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVSEARRRREELNK 181

Query: 184 ESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDG 243
           ESQLFGAMDGAMKFVKGDAIAGL+IVV+NL+GGFS GM QH + ASES+ LY+VLTIGDG
Sbjct: 182 ESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIGDG 241

Query: 244 LIAQIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVV 303
           LIAQIPALLISLTAGMIITRV+P G    S++G EIA+Q+T+EPK+W+IASVGML FA +
Sbjct: 242 LIAQIPALLISLTAGMIITRVSPQGEPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAAL 301

Query: 304 PGMPTGVFILIALVTGSLGYYLMRQRQRQEQPAAETAEAVRPEENGSEDLRGFDPSRPYL 363
           PGMPT VFI+IAL+TG+ G   +  R R  +   + AE V P +NG+EDLR FDP+R YL
Sbjct: 302 PGMPTLVFIVIALITGTAGIVQLYSRARLARQGDQPAEVVAPAQNGAEDLRSFDPTRAYL 361

Query: 364 LQFSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVPM 423
           LQFS  + G     + + +IR+ RNALVA  GLTLPPFE+E    L DDE RFCVHEVPM
Sbjct: 362 LQFSKAMEGNAAAEEAIQAIRKKRNALVAGFGLTLPPFEIEYSALLEDDEFRFCVHEVPM 421

Query: 424 VKASVVSHVAVERKALSVEPAHAIAGLVERDEQDWLWLAPDDPLLDDPQLERFTAASLIV 483
           ++A+    VAV R  L +EP     G   RDEQ WLWL PDDPLL D ++E  +AA L+V
Sbjct: 422 LRATFGERVAVARGPLPLEPRDGQVGSEVRDEQQWLWLTPDDPLLADERVEAVSAAELLV 481

Query: 484 ERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSAVLQRLASEGVP 543
           ERM +AM  +GPQFLG+QESKSILSWLE  QPELVQELQR MPL+RF+AVLQRLA EGVP
Sbjct: 482 ERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLARFAAVLQRLAGEGVP 541

Query: 544 LRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADGLHAWLLSPQTENILR 603
           LRAVRLI ESLIE+GQHER+  AL DYARIALK+QIYHQY + DGLH WLL+P+TE +LR
Sbjct: 542 LRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDEDGLHVWLLTPETEGLLR 601

Query: 604 EALRQTQTGVFFALDDEHSAVLVSLLNQAFPVRPKLKSVMLVAQDLRSPLRTLLLEEFNH 663
           +ALRQTQT  FFAL+  H+  LV  L + FP+R K  +V+LVAQDLR+PLR LL +EFNH
Sbjct: 602 DALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAVLLVAQDLRAPLRDLLRDEFNH 661

Query: 664 VPVLSFAELGSASKVKVLGRFDLGQDEL 691
           VPVL+F+EL S ++V VLGRFDL Q++L
Sbjct: 662 VPVLAFSELHSNAQVTVLGRFDLEQEKL 689