Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 683 a.a., type III secretion system protein InvA from Pseudomonas fluorescens FW300-N2C3

 Score =  406 bits (1043), Expect = e-117
 Identities = 257/692 (37%), Positives = 396/692 (57%), Gaps = 30/692 (4%)

Query: 7   INSFLLKVAQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGP 66
           +N FL  V  R E+L   +++ I+ + I+PLPT LVD LI LNI IS L+ + + Y+   
Sbjct: 2   LNVFLRSVGARPELLILTLMVMIIAMLIIPLPTVLVDFLIGLNIVISLLVFMGSFYIERI 61

Query: 67  LAFSSFPSILLLTTMFRLALSIATTRLILLEQDAGHIVEAFGNFVVGGNLAVGMVIFLIL 126
           L++S+FP++LLLTT+FRLALSI+T+RLIL + DAG I+ +FG+FV+G +L VG VIF I+
Sbjct: 62  LSYSTFPALLLLTTLFRLALSISTSRLILSQADAGEIIASFGDFVIGESLVVGFVIFSIV 121

Query: 127 TLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQ 186
           T+V F+VITKGSERVAEVAARFSLD MPGKQMSID DL+AG ID  QAR+KR  L RESQ
Sbjct: 122 TIVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDGDLKAGAIDAAQAREKRSVLERESQ 181

Query: 187 LFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIA 246
           L+G+ DGAMKF+KGDAIAG+II+ VN +GG + G+ Q G+  S ++S Y++LTIGDGL+A
Sbjct: 182 LYGSFDGAMKFIKGDAIAGIIIIFVNFIGGMAIGVGQLGMDLSTALSTYTLLTIGDGLVA 241

Query: 247 QIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGM 306
           QIPALLI++ AG I+TRV  D     SN+G  +  QM   P    + ++  +   ++PG 
Sbjct: 242 QIPALLIAIGAGFIVTRVNGDD----SNLGRNMLTQMLGNPFVLGVTALLAVGVGLLPGF 297

Query: 307 PTGVFILIALVTGSLGYYLMRQRQRQEQPAAETAEAVRPEENGS--------EDLRGFDP 358
           P   F+ IA V   LG  +  + +R  +PA        P E G+        +D+     
Sbjct: 298 PLPTFLSIAAV---LGLVVFVRHRRASRPAGSGESRSEPVEAGAGPGASGLIDDVDNVAT 354

Query: 359 SRPYLLQFSPVIRGTPEVADLVHSIRQA---RNALVANIGLTLPPFEVELDDSLADDEMR 415
               L+   P     P     +   R A   R+    + GL +P   +   + L   ++ 
Sbjct: 355 ETIALMLLVP-----PAHLQALEKNRWAARFRSQFFVDYGLRIPEPRLRASEVLPVHQVA 409

Query: 416 FCVHEVPMVKASV-VSHVAVERKALSVEP-AHAIAGLVERDEQDWLWL-APDDPLLDDPQ 472
             ++EV   +  +   H  +   +  +EP   A+    + +    +W+ A D   +    
Sbjct: 410 VLINEVRAEQFDIHFDHWRLLDYSPELEPLGFALVRGTDSNRLGGVWVTATDRERVQQLG 469

Query: 473 LERFTAASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSA 532
                A       +   +  +  +F G+QE+K +L  +E   P+L++E+ R + + + + 
Sbjct: 470 YHLRPADEECYRCLVTLLARNIQEFFGVQETKQLLDEMEARYPDLLKEVYRHVTVQKIAE 529

Query: 533 VLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADGLHAW 592
           VLQRL  E + +R ++LI+ESL  +   E++  AL ++ R A+   I +++++ + L   
Sbjct: 530 VLQRLIGERISVRNMKLILESLAHWASREKDVLALVEHVRGAMARYISNKFAQGNDLRVL 589

Query: 593 LLSPQTENILREALRQTQTGVFFALDDEHSAVLVSLLN---QAFPVRPKLKSVMLVAQDL 649
           LLS + E+++R  +RQT  G F  L+   S  L+  L+    +  +  K   V+L + D+
Sbjct: 590 LLSAEFEDVVRRGIRQTSGGNFLNLEPADSEELMDRLSVGLDSVHIAHK-DMVLLCSVDV 648

Query: 650 RSPLRTLLLEEFNHVPVLSFAELGSASKVKVL 681
           R  ++ L+   F  + V+SF E+     V V+
Sbjct: 649 RRYIKKLIEGRFRELDVMSFGEVSENVSVNVI 680