Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 709 a.a., flagellar biosynthesis protein FlhA from Pseudomonas fluorescens FW300-N2E3

 Score =  333 bits (853), Expect = 2e-95
 Identities = 199/620 (32%), Positives = 349/620 (56%), Gaps = 47/620 (7%)

Query: 24  VVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSILLLTTMFR 83
           ++++ ++ + ++P+P +L+D+    NI +S +++++ +Y   PL F+ FP+ILL+ T+ R
Sbjct: 26  LLLLVMLAMMMLPVPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAVFPTILLVATLLR 85

Query: 84  LALSIATTRLILLEQDAGH-----IVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGS 138
           LAL++A+TR+++L    GH     +++AFG  V+GGN  VG+V+F IL ++NF+V+TKG+
Sbjct: 86  LALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVVTKGA 145

Query: 139 ERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDGAMKFV 198
            R++EV+ARF+LDAMPGKQM+ID+DL AGLID   A+ +R ++++E++ +G+MDGA KFV
Sbjct: 146 GRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPAAKLRRMEVAQEAEFYGSMDGASKFV 205

Query: 199 KGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLISLTAG 258
           +GDAIAGL+I+ +NL+GG + G+FQHG+S  ++  +Y++LTIGDGL+AQ+P+LL+S  A 
Sbjct: 206 RGDAIAGLLILFINLIGGMAVGIFQHGMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAA 265

Query: 259 MIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVFILIALVT 318
           +++TR +     G+ +MG +I RQM + PK+  +A+  M    +VPGMP   F+ +A V 
Sbjct: 266 IMVTRAS-----GSEDMGKQINRQMFASPKALAVAAGLMAVMGLVPGMPHFSFLSMAAVA 320

Query: 319 GSLGYYLMRQR-----------QRQEQPAAETAEAVRPEENGSEDLRGFDPSRPYLLQFS 367
               Y   ++            +RQ+      A A+  +E G +D+   D     ++   
Sbjct: 321 AGGAYLFWKKHNIVKVQALEEVKRQQDLLPSPARAMETKELGWDDVTPID-----MIGLE 375

Query: 368 PVIRGTPEV-----ADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVP 422
              R  P V       L+  I+  R  L  ++G  +P   +  +  LA    R  +  V 
Sbjct: 376 VGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAPSAYRLTLMGVI 435

Query: 423 MVKASVVSHVAVERKALSVEPAH---AIAGLVERD-----EQDWLWLAPDDPLLDDPQLE 474
           + +A +        + L++ P      + G+  +D     E  W+ ++   P        
Sbjct: 436 LAEAEIYPD-----RELAINPGQVYGTLNGITAKDPAFGLEAVWIEIS-QRPQAQSLGYT 489

Query: 475 RFTAASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSRFSAV 533
              A++++   + Q +     + +G +E + ++  L  + P+L +EL   ++ LS+   V
Sbjct: 490 VVDASTVVATHLNQILYKHSSELIGHEEVQQLMQLLAKSSPKLAEELVPGVVSLSQLLKV 549

Query: 534 LQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADG-LHAW 592
           LQ L +E VP+R +R I E++       ++  AL    R+ +   I       +  L   
Sbjct: 550 LQALLAEQVPVRDIRSIAEAIANNAAKSQDTAALVAAVRVGVSRAIVQSIVGTESELPVI 609

Query: 593 LLSPQTENILREALRQTQTG 612
            L P+ E IL  +L++   G
Sbjct: 610 TLEPRLEQILLNSLQKAGQG 629