Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

 Score =  366 bits (939), Expect = e-105
 Identities = 228/698 (32%), Positives = 401/698 (57%), Gaps = 43/698 (6%)

Query: 11  LLKVAQRA-EVLGA-VVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLA 68
           L  + QR+   +GA V+V+A + + ++P+P +L+D+    NI +S +++++ +Y   PL 
Sbjct: 11  LPSIPQRSMPAIGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLD 70

Query: 69  FSSFPSILLLTTMFRLALSIATTRLILLEQD-----AGHIVEAFGNFVVGGNLAVGMVIF 123
           F++FP++LL+ T+ RLAL++A+TR++LL        AG+++EAFGN V+GGN AVG+V+F
Sbjct: 71  FAAFPTVLLIATLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVF 130

Query: 124 LILTLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSR 183
           LIL ++NF+V+TKG+ R++EV+ARF+LDA+PGKQM+ID+DL AGLID  QAR +R ++++
Sbjct: 131 LILMIINFMVVTKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTK 190

Query: 184 ESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDG 243
           E+  +G+MDGA KFVKGDAIAG++I+ +N++GG S GM Q+ L   E+I +Y++LTIGDG
Sbjct: 191 EADFYGSMDGASKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDG 250

Query: 244 LIAQIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVV 303
           L+AQIP+LL+S+ A +++TR   D      +MG ++  Q+   PK+  I +  +    +V
Sbjct: 251 LVAQIPSLLLSIGAAIMVTRQNTD-----EDMGQQVIFQLFDNPKALTITAGILFVMGIV 305

Query: 304 PGMPTGVFILIALVTGSLGYYLMRQRQRQEQ----PAAETAEAVRPEENGSEDLRGFDP- 358
           PGMP   F+ +AL+     Y+L R+++ + +    PA    E     E   +D++  D  
Sbjct: 306 PGMPHFAFLFLALLASGAAYWLHRKQKTKAENKNLPAKSDVETPTQRELSWDDVQPVDVI 365

Query: 359 SRPYLLQFSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCV 418
                 +  P++    +  +L+  ++  R  L  + G  +PP  +  +  L  +  R  +
Sbjct: 366 GLEVGYRLIPLV-DKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITL 424

Query: 419 HEVPMVKASVVSHVAVERKALSVEPAHAIAGLVERDEQ-------DWLWLAPDDPLLDDP 471
             V + +A +        + L++ P   + G+++ +         D +W+  D    +  
Sbjct: 425 MGVAVGEAEIRPD-----QELAINPGQ-VYGMIDGERTRDPAFGLDAVWIREDQ--REHA 476

Query: 472 QLERFT---AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQE-LQRIMPL 527
           Q   +T   +++++   + Q +  +  Q +G +E +++L  L  + P+LV+  +   + L
Sbjct: 477 QALGYTVVDSSTVLATHLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSL 536

Query: 528 SRFSAVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEAD 587
                VLQ L  E +P+R +R IV++L EY    +EPD L    RI+LK  I  + +  +
Sbjct: 537 GVVVKVLQNLLHEAIPIRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVE 596

Query: 588 -GLHAWLLSPQTENILREALRQTQTGVFFALDDEHSAVLVSLLNQAFPVRPKLK---SVM 643
             L    L P+ E IL + + Q   G    ++   +  L   L+ A     +LK   +V+
Sbjct: 597 PELPVITLIPELEQILHQTM-QASGGESAGIEPGLAERLQMALSHA-TQEQELKGEPAVL 654

Query: 644 LVAQDLRSPLRTLLLEEFNHVPVLSFAELGSASKVKVL 681
           L +  LRS L   +     ++ VLS+ E+    +++++
Sbjct: 655 LTSGVLRSTLAKFVKNTIPNLRVLSYQEIPDEKQIRIV 692