Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 695 a.a., flagellar biosynthesis protein FlhA from Sinorhizobium meliloti 1021

 Score =  331 bits (848), Expect = 8e-95
 Identities = 217/691 (31%), Positives = 380/691 (54%), Gaps = 50/691 (7%)

Query: 21  LGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSILLLTT 80
           LG V++++I+F+   P+P +L+D+ +A +I  S L++++AL++  PL FSSFP+ILL++T
Sbjct: 23  LGIVMILSILFL---PIPPFLIDLGLAFSISFSVLILMVALWIQRPLDFSSFPTILLIST 79

Query: 81  MFRLALSIATTRLILLEQDAGH-----IVEAFGNFVVGGNLAVGMVIFLILTLVNFLVIT 135
           M RLAL+IATTR+IL     GH     ++  F + V+ G+  +G+++FLIL  VNF+VIT
Sbjct: 80  MIRLALNIATTRVILSHGHEGHGAAGGVISGFASLVMSGDFVIGLIVFLILITVNFIVIT 139

Query: 136 KGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDGAM 195
           KG+ R+AEV ARF+LDA+PGKQMSID+DL AGLID  +A+ +R +L  ES  FGAMDGA 
Sbjct: 140 KGATRIAEVGARFTLDAIPGKQMSIDADLSAGLIDEKEAQRRRRELEEESSFFGAMDGAS 199

Query: 196 KFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLISL 255
           KFV+GDAIAGLII  +N+ GG   G  +H +   E+  ++  L++GDGL++QIPAL++SL
Sbjct: 200 KFVRGDAIAGLIITAINVFGGIIIGYLRHDMEIGEAADVFVKLSVGDGLVSQIPALIVSL 259

Query: 256 TAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVFILIA 315
            AG++I+R    G  G+++    +  Q++  P++ M+AS  ++  +V PG+P   F  + 
Sbjct: 260 AAGLLISR---GGTAGSTDQA--VVGQLSGYPRALMVASGLIVLLSVTPGLPFLPFAALG 314

Query: 316 LVTGSLGYYLMRQRQRQEQPAA--ETAEAVRPEENGSEDLRGFDPSRPYLL----QFSPV 369
                L +++ +Q + ++      E A+A + +E+  + ++    +    L    Q S  
Sbjct: 315 GGMAFLAWFIPKQIEAEKAAKRDEEAAKAQQSKESDKDSVKSVLKTAEIELLLGKQVSTR 374

Query: 370 IRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVPMVKASVV 429
           + G  +  +L   + + R       GL +P  +V  D ++ D      +H       ++ 
Sbjct: 375 LLGAHQ--ELAFRVGKMRRKFALQYGLVVPEIKVSDDITIPDKAYHVRIHGT-----TIA 427

Query: 430 SHVAVERKALSVEPAHAIAGLVERDEQDWLWLAPDDPLLD----DPQLERFTA---ASLI 482
           S+     + L V        +   D ++  +  P   +L+    D + E F      S++
Sbjct: 428 SNTVRVGEVLVVTGGGRRPSVPGDDIREPAFGMPAVSILETFTEDLKREGFHPIDNVSVV 487

Query: 483 VERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSRFSAVLQRLASEG 541
           +  + + +  + PQ L  ++ K ++  L+    +L  E+    M  S   AVL+ L +E 
Sbjct: 488 LTHLSEVIRNNLPQLLSYKDVKVLIERLDPEYRKLADEICTSHMSYSGLQAVLKLLLAER 547

Query: 542 VPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADGLHAWLLSPQTENI 601
           V +R + LI+E++ E   H R+ + + ++ R+ +  Q+    ++   L    L  + + +
Sbjct: 548 VSIRNLHLILEAVAELAPHVRKTEQIVEHVRVRMSQQLCGDLADNGVLRVLRLGNKWDMV 607

Query: 602 LREALRQTQTG--VFFALDDEH--------SAVLVSLLNQAFPVRPKLKSVMLVAQDLRS 651
             +AL++   G  V F +D  H        + V+   L++  P       V++ + + RS
Sbjct: 608 FHQALKRDAKGEIVEFDIDPRHLEEFSEQATKVIREHLDRGMPF------VLVSSPESRS 661

Query: 652 PLRTLLLEEFNHVPVLSFAELGSASKVKVLG 682
            +R ++   F  +PVLS  EL    ++K++G
Sbjct: 662 YVRMIIERLFATLPVLSHVELAKGLEIKIIG 692