Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 720 a.a., Flagellar biosynthesis protein FlhA (NCBI) from Rhodospirillum rubrum S1H

 Score =  330 bits (845), Expect = 2e-94
 Identities = 229/689 (33%), Positives = 370/689 (53%), Gaps = 51/689 (7%)

Query: 26  VMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSILLLTTMFRLA 85
           ++AI+ + I+P+PTWL+DI++A+++ +S L+++  +++   L FS+FP +LL+TTM RLA
Sbjct: 51  LIAILVVLILPMPTWLLDIMLAMSLTLSVLILMTVVFIRKALEFSTFPMVLLITTMLRLA 110

Query: 86  LSIATTRLILLEQD-----AGHIVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGSER 140
           L++A+TRLIL +       AGH++EAFG F++GGN  +G+++F IL LVNF+VITKG+ R
Sbjct: 111 LNLASTRLILAQGHEGTAAAGHVIEAFGGFIMGGNFVIGVIVFSILVLVNFMVITKGATR 170

Query: 141 VAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDGAMKFVKG 200
           +AEV ARF+LDAMPGKQM+ID+DL +GLID  +AR +RE++ +ES  FGAMDGA KFV+G
Sbjct: 171 IAEVTARFTLDAMPGKQMAIDADLSSGLIDETEARRRREEMQKESDFFGAMDGASKFVRG 230

Query: 201 DAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLISLTAGMI 260
           DAIAG+II  +N++GG   G+ Q+ L+ SE+ + Y+ LT+GDGL++QIPAL+IS+ AG++
Sbjct: 231 DAIAGIIITFINVIGGMIIGIAQNDLTFSEAANTYTALTVGDGLVSQIPALIISVAAGVM 290

Query: 261 ITRVAPDGRRGASNMGAEIA--RQMTSEPKSWMIASVGMLAFAVVPGMPTGVFILIALVT 318
           ++       +G     AE A   Q T+ PK+  +++    A A+VPG P   F+L+A +T
Sbjct: 291 VS-------KGGLTTTAETALIGQFTAYPKALGMSAFLAGALALVPGTPALPFLLLAGLT 343

Query: 319 GSLGYYLMRQRQRQEQPAAE------TAEAVRPEENGSEDLRGFDPSRPYLLQFSPVIRG 372
           G   ++L R+    ++  AE      T E    EE  S  L+  D  R  L      +  
Sbjct: 344 GGAAWWLNRKASNIKRDEAEHAQELATQEIPVAEEPISTALK-IDLVRLELGYGLLSLIN 402

Query: 373 TPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVPMVKAS----- 427
           T     L   I+  R AL  ++G  +PP  ++ +  LA +  R  + EV           
Sbjct: 403 TAHNQRLTDQIKALRRALATDMGFVMPPVRIQDNMQLAANTYRIYIKEVEAGHGDLRPTM 462

Query: 428 -VVSHVAVERKALSVEPAH--------AIAGLVERDEQDWLWLAPDDPLLDDPQLERFTA 478
            +V     +   L+ E  H            L  R+E  +      DP            
Sbjct: 463 LLVMDPRGDEITLAGEKTHEPTFGLPAVWVDLSNREEAMFRGYTVVDP------------ 510

Query: 479 ASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQE-LQRIMPLSRFSAVLQRL 537
            ++I   + + +     + L   E++ +L  L+  Q +L+ + +   +  S    VLQ L
Sbjct: 511 PTVITTHITEVVKDHMAELLSYAETQKLLDDLDKEQQKLIADMIPTQISTSGVQRVLQNL 570

Query: 538 ASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADGLHAWL-LSP 596
            +E V +R +  I+E + E     R    + ++ R  +  Q+       DG+   + LSP
Sbjct: 571 LAERVSIRDLPTILEGVAEACGATRNIMMITEHVRTRIARQLSDANVNEDGIVPLVTLSP 630

Query: 597 QTENILREAL-RQTQTGVFFALDDEHSAVLVSLLNQAFPVRPKLKSVMLVAQDLRSPLRT 655
           Q E    EAL  Q +         +    +V +         + +S +L+   +  P   
Sbjct: 631 QWETAFAEALIGQGEDRQLSMAPSKLQEFIVGVRQTFERFAMQGESPVLLTSPMIRPYVR 690

Query: 656 LLLEEFNHVP-VLSFAELGSASKVKVLGR 683
            ++E F  +  V+S  E+   +K+K LG+
Sbjct: 691 SIIERFRPMTVVMSQNEIHPKAKIKTLGQ 719