Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 691 a.a., type III secretion protein from Burkholderia phytofirmans PsJN

 Score =  380 bits (977), Expect = e-110
 Identities = 229/676 (33%), Positives = 386/676 (57%), Gaps = 33/676 (4%)

Query: 14  VAQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFP 73
           +A+ A++     +++++ + I+P+P++++D+ I ++   S +++   +Y   P+  SSFP
Sbjct: 16  IARHADLAVGAGMLSVLVLLILPVPSFVLDLFICVSFTASFVMLAATIYAAKPVELSSFP 75

Query: 74  SILLLTTMFRLALSIATTRLILLEQDAGHIVEAFGNFVVGGNLAVGMVIFLILTLVNFLV 133
           S+LL+TT+ RLAL+IA+T++ILL   AG I+ AFG  VVGGN+AVGMV+F++L+ + F+V
Sbjct: 76  SLLLVTTLLRLALAIASTKMILLYAHAGQIIGAFGEIVVGGNVAVGMVVFIVLSAIQFIV 135

Query: 134 ITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDG 193
           + KG++RVAEV+ARF+LD +PG+QMSID+DLR GLI   +A   R +L RE+  +G++DG
Sbjct: 136 VAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELERETYFYGSLDG 195

Query: 194 AMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLI 253
           AMKFVKGDAIAGL++ +VN+ GG + G+ Q G+S +E++  Y++LT+GDGL++QIP+L++
Sbjct: 196 AMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGDGLVSQIPSLIV 255

Query: 254 SLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVFIL 313
           S++AG+++TRV+  G  G  N+G +I +Q+++ P + ++A    LA A +PG P   F+L
Sbjct: 256 SISAGLLVTRVSSGGVGG--NLGGDIFKQLSAHPPAMVMAGTACLALACIPGFPHIQFVL 313

Query: 314 IALVTGSLGYYLMRQRQRQEQPAAETAEAVRPEENGSEDLRGFD-----PSRPYLLQFSP 368
            A+V   L   LMRQR   ++ A     A+   + G+   R  D      S P  ++   
Sbjct: 314 AAVVLIGLAVALMRQRAAADRAARPKMPAM-TRDGGNYVQRILDDVELGTSSPLRVRLGS 372

Query: 369 VIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVPMVKASV 428
                   A+L   + Q R  L+  +G+  P   +  D  L  D     + +VP    ++
Sbjct: 373 AACNALNAAELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVDRYIVDIDDVPFSGGTL 432

Query: 429 VS-HVAV----ERKALSVEPAHAIAGLVERDEQDWLWLAPDDPL-LDDPQLERFTAASLI 482
           ++ HV V    ER  +   P     G   R E+  +W+  D    +DD QL + +A  L+
Sbjct: 433 LAGHVLVSGDTERVTMEGPP-----GYHPRAEKS-VWVRADSAAGIDDTQLMKSSANGLL 486

Query: 483 VERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSAVLQRLASEGV 542
            + +        P F+G QE++ +L+ +     ELV   Q+++  ++ +AVL+ L  + V
Sbjct: 487 CDHLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVTVAQKVVTTAQIAAVLRSLLEQRV 546

Query: 543 PLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADG--LHAWLLSPQTEN 600
            +R +R I+E++++    ER  D +   ARIAL  Q+   Y++     +HA +L P  E 
Sbjct: 547 SIRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAVLEPSWE- 605

Query: 601 ILREALRQTQTGVFFALDDEHSAVL----VSLLNQAFPVRPKLKSVMLVAQDLRSPLRTL 656
                  + +  +    D E   VL    +  L + F  R  +  +++    LR  L  +
Sbjct: 606 ------AELEAQIDLGPDGEPRCVLDADRLESLQRGFAARNDVVRLVVTTAVLRPHLERV 659

Query: 657 LLEEFNHVPVLSFAEL 672
           L        VL+  E+
Sbjct: 660 LRTLGMRTDVLAMEEI 675