Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 4/149 (2%)

Query: 29  KLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGN-ATLSTWMCGIAQNLIRNHFRRM 87
           KL++F+ K V + + A +L+Q T    W+    F G  ++L+TW+  IA+NL  +  RR 
Sbjct: 39  KLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLLRRQ 98

Query: 88  YAKPVHCEFDESLWHGQEDNRNLDWEFEVNRRL--EKTLSAIDHLPVEMRKTLYASLETD 145
             +  +   D+ +W       +L   +   + L  E+ +  +D LP   ++ + A    +
Sbjct: 99  KGRDAYVLADD-IWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEE 157

Query: 146 GSYQDTADALDIPIGTVRSRLSRAREQLK 174
              QD AD LDIP+GTV+SRL  A E+L+
Sbjct: 158 IPQQDVADMLDIPLGTVKSRLRLAVEKLR 186