Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 184 a.a., RNA polymerase sigma factor protein from Sinorhizobium meliloti 1021

 Score = 72.8 bits (177), Expect = 3e-18
 Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 25  EQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIRNHF 84
           E    LRR+      +  D +DLLQ    +    RE++ G   L  W   I  NL RN  
Sbjct: 28  ELMPALRRYSRSLAHSDPDGEDLLQDCVEKVLARREQWRG-VNLRAWAFTIMTNLFRNGH 86

Query: 85  RRMYAKPVHCEFDESLW-HGQEDNRNLDWEFEVNRRLEKTLSAIDHLPVEMRKTLYASLE 143
           RR    P   EFDE+L    +EDN +           ++ +  ++ L  + R  L   + 
Sbjct: 87  RRRAQHP-EVEFDEALGLRAEEDNAD-------PLERQRLMRGLERLSADNRAVLMLVVI 138

Query: 144 TDGSYQDTADALDIPIGTVRSRLSRAREQLKRA 176
               YQD AD ++IPIGTV SRLSRAR QL  A
Sbjct: 139 EGYRYQDVADMMEIPIGTVMSRLSRARRQLAEA 171