Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 173 a.a., RNA polymerase sigma-E factor (sigma-24) protein from Sinorhizobium meliloti 1021

 Score = 59.7 bits (143), Expect = 3e-14
 Identities = 52/156 (33%), Positives = 71/156 (45%), Gaps = 15/156 (9%)

Query: 30  LRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIRNHFR---R 86
           LR F         +ADDL+Q T L A R+ E+F    +L +W+  I +N  R  ++   R
Sbjct: 26  LRAFARTFTSASFEADDLVQETLLRALRSIEQFEPGTSLKSWLFTIMRNAFRTQYKIRTR 85

Query: 87  MYAKPVHC-EFDESLWHGQEDNRNLDWEFEVNRRLEKTLSAIDHLPVEMRKTLYASLETD 145
                 +C E        QE      W   +N  L   L A   L  E R+ L       
Sbjct: 86  ESPGSTNCAELPIPTAPSQE------WSV-LNGELRSALGA---LSPEHREVLVLVAGFG 135

Query: 146 GSYQDTADALDIPIGTVRSRLSRAREQLKRATH-NP 180
            SY++ AD  D  IGT++SRLSRAR++L    H NP
Sbjct: 136 MSYKEAADICDCAIGTIKSRLSRARDELTAQMHGNP 171