Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella loihica PV-4

 Score = 68.6 bits (166), Expect = 6e-17
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 18/166 (10%)

Query: 22  LTDEQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIR 81
           L  + Q K+   I + V N  D  D+ Q  +++A+R    F G +   TW+  IA N  +
Sbjct: 25  LVHKYQSKVINLIARYVRNQADVADVAQEAFIKAYRALPNFRGESAFYTWLYRIAVNTAK 84

Query: 82  NHF----RRMYAKPVHCEFDESLWHGQEDNRNLDWEFEVNRRL-------EKTLSAIDHL 130
           NH     RR  A  V  E  E       D  +   EF    RL       +     +D L
Sbjct: 85  NHLVAQGRRAPANDVDAEEAE-----YYDGSDALKEFASPERLMLSDEIQKVVFDTLDTL 139

Query: 131 PVEMRKTLYASLETDG-SYQDTADALDIPIGTVRSRLSRAREQLKR 175
           P E++  + +  E DG SY++ A+ ++ P+GTVRSR+ RARE + +
Sbjct: 140 PEELKMAI-SLRELDGMSYEEIANVMECPVGTVRSRIFRAREAIDK 184