Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 179 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

 Score = 55.8 bits (133), Expect = 4e-13
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 44  ADDLLQLTYLEAWRNRERFSGN-ATLSTWMCGIAQNLIRNHFRRMYAKPVHCEFD-ESLW 101
           A++L+Q  ++  WR    +    A  STW+  IA+N   +  R+M         + E LW
Sbjct: 38  AEELVQEVFVSIWRRSCLYDWRKAAASTWIFTIARNQRIDMLRKMQRTSAEMPVETEDLW 97

Query: 102 HGQEDNRNLD----WEFEVNRRLEKTLSAIDHLPVEMRKTLYASLETDGSYQDTADALDI 157
               +N N            RR+ ++LS   HLP E    +      + S+Q  AD LDI
Sbjct: 98  QIPGENENEPVTSLHRLMSERRIRESLS---HLPEEQITVIAKVYMENKSHQMVADELDI 154

Query: 158 PIGTVRSRLSRAREQLK 174
           P+GTV+SR+  A  +LK
Sbjct: 155 PLGTVKSRVRLALNKLK 171