Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 413 a.a., Tricarboxylate porin OpdH from Pseudomonas fluorescens FW300-N1B4

 Score =  246 bits (628), Expect = 1e-69
 Identities = 158/431 (36%), Positives = 225/431 (52%), Gaps = 28/431 (6%)

Query: 8   LHLSLCAALPFTAVAAQDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPTGNGYSEAWAQ 67
           L+L +   L  + + A      FI  S  ++ ARNFYFNRD R+  S       +E WAQ
Sbjct: 10  LYLPVGTLLGLSLLGAPAAQADFITDSKGSLEARNFYFNRDFRQEGSRDK----AEEWAQ 65

Query: 68  GLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPEDNYSKV 127
           G + R ESG+T GT+GFGLDA  M G KLDSG    GG     +LP DSS   +D Y ++
Sbjct: 66  GFLLRMESGYTAGTLGFGLDALGMAGFKLDSG----GGTAGTNLLPPDSSGGSQDRYGEL 121

Query: 128 GGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQGGRLTGM 187
           G  AK+R+  + +K G +    PVV   D+R+LP +F+G       ++ L L  G+LT +
Sbjct: 122 GLTAKVRLSKSTLKLGTLQIKDPVVNSNDTRLLPSTFKGGLVNVQEIDRLKLTAGQLTQI 181

Query: 188 SQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQYYFGSAA 247
           +    +      A    G  D     + G DY    NL+      +L++ + Q Y G   
Sbjct: 182 NFVDSTDYQDMTANRIGGQSDK--FQFAGADYQFLPNLTAQYRYGKLENIYQQNYLGLVH 239

Query: 248 RYPLNDEVSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSLAVSHQRNNGDDD 307
              L    SL  D  Y +++++G  R    DN  + A      G H+L   +QR +GDD 
Sbjct: 240 LLDLGGGQSLKSDVRYARSIEDGNFR--DLDNQAFGAMFTYSRGGHALGFGYQRMSGDDP 297

Query: 308 FDYLRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTRYGKGSGADYS 367
           F Y+ +SD  +L N +Q +DF +  E SW  RYD +  A G+PGLSFMTRY  G      
Sbjct: 298 FPYIGRSDP-YLVNFVQINDFANVDEHSWQTRYDYNFAALGVPGLSFMTRYISGDN---- 352

Query: 368 NANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVRSSAFESDLEE 427
                 ++R  AG    + + WERD + +YVVQ G LK L  + R A+VRS+ F +DL+E
Sbjct: 353 ------VQRSAAG----EGKEWERDTDIAYVVQDGTLKGLGFKWRNASVRSN-FGNDLDE 401

Query: 428 VRVIVEYPIAV 438
            R+IV Y +A+
Sbjct: 402 NRLIVSYTLAL 412