Pairwise Alignments

Query, 406 a.a., type I secretion protein TolC from Pseudomonas simiae WCS417

Subject, 420 a.a., Outer membrane protein from Sphingomonas koreensis DSMZ 15582

 Score =  146 bits (368), Expect = 1e-39
 Identities = 122/407 (29%), Positives = 183/407 (44%), Gaps = 38/407 (9%)

Query: 18  ASAAQAQT---------LTLDSALQTAFANNPDLAAAQWEIDIAQGGRQQAGLIPNPVAS 68
           A  AQAQT         LT+D AL  A A +P    A+  I  A+ GR  AGL PNP  +
Sbjct: 15  AGIAQAQTSPPASAGDVLTIDDALAQAGAVSPTGDVAEAGIRAAEAGRVVAGLRPNPTVT 74

Query: 69  WDVEDTRR-------DSRTTSIKISQALELGGKRGARIDVASRVQDAAALTLEQRRNSLR 121
            DVE+          D   T++  +  +ELGGKR ARI V+      A +        LR
Sbjct: 75  TDVENILGTGPYRGLDESETTVNFALPIELGGKRSARIAVSEAEITRARIQTLVAGADLR 134

Query: 122 AEVIDNYYGALRAQERLDLAQRSMTLAERGLVVANGRVTAGKASPVEATRAQVQLSEIRL 181
             V+  Y  A+ ++ R  +A+  +T+    L +A  RV AG  SP++  RAQ+Q      
Sbjct: 135 LGVVQAYVQAIASERRRAIAESQITVTTENLRIARDRVEAGANSPIDEQRAQLQQVNAET 194

Query: 182 ERDRAQMGLTDAYRRLAASTGSA------APNFQAVATRNPSTLAVPSATQLLARLEQTA 235
           E  +AQ     A   L    G        A  ++ V    P         Q   R + T 
Sbjct: 195 ELAQAQRAAEAARATLERYLGRPLNESLDAAWYERVGGYGP---------QEPVRADGTL 245

Query: 236 ELRLAELSILQYEASIGLEKAQRIPDLDVSIGSQYDASVRERVSLVGVSMPIPLFNRNQG 295
            L +A   +   EA + L ++QR+PDL VS G++   + +++  +  VS+P+P+FN  + 
Sbjct: 246 ALAIARADVSAAEARVRLARSQRVPDLTVSAGTRRLTATKDQAMVFSVSVPLPIFNNGRA 305

Query: 296 NVLAATRRADQARDLRNATELRLRTETRQAVDLWQSANTEVRVFNQQILPAAQSAVDS-- 353
           +V  A    D+    R         E  QA+   ++         +   PA  +A +S  
Sbjct: 306 SVNQALAERDRVDAQRRVALF----EAEQAITAARADRDRAAAAVRASGPALAAATESAR 361

Query: 354 -ATRGFEMGKFSFLDVLDAQRTLIAARTQYLTATAQATDAWVRIERI 399
            A  G+  GKF  + +LDA+RTL+  R   + A AQ  DA  R+ R+
Sbjct: 362 IARLGYGEGKFDQIVLLDAERTLLDTRRAAVDALAQYHDAEARLARL 408