Pairwise Alignments

Query, 406 a.a., type I secretion protein TolC from Pseudomonas simiae WCS417

Subject, 427 a.a., outer membrane efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score = 78.2 bits (191), Expect = 4e-19
 Identities = 97/399 (24%), Positives = 170/399 (42%), Gaps = 21/399 (5%)

Query: 16  VVASAAQAQTLTLDSALQTAFANNPDLAAAQWEIDIAQGGRQQAGLIPNPVASWDVEDTR 75
           V  S    QTLTL  A+      +P+L     +  + +G  QQA +   P     +ED  
Sbjct: 32  VAVSNEAPQTLTLADAVTLTLLQHPELQIFNSQQRVMEGRIQQASVGERPEIGLMIEDAL 91

Query: 76  RDSRTTSIKISQALELGGKRGARIDVASRVQ----DAAALTLEQRRNSL--RAEVIDNYY 129
                +++K  Q+         +  + SRV     +A  L +E++  +L   ++V  ++ 
Sbjct: 92  GTGEHSALKSMQSTLSFSWLLQQDLIDSRVNTAKTEATQLDIEKQIKALDLSSQVAKHFI 151

Query: 130 GALRAQERLDLAQRSMTLAERGLVVANGRVTAGKASPVEATRAQVQLSEIRLERDRAQMG 189
             L  QERL L   +   A+  +     RV AGK+S VE   A+ +L    L  +  +  
Sbjct: 152 DLLVKQERLKLNLIAEKQAKEVVKTVAKRVQAGKSSAVETQLAKAELIRRGLAVEDIEHE 211

Query: 190 LTDAYRRLAASTG--SAAPNFQAVATRNPSTLAVPSATQLLARLEQTAELRLAELSILQY 247
           L  +  +LA+  G   A+  F       P+  +V S   LL +  +  +   A+      
Sbjct: 212 LKASQYQLASQWGKPKASYRFNGNLLDMPAVPSVDSQLNLLKKHPRFQQFATAQRIA--- 268

Query: 248 EASIGLEKAQRIPDLDVSIG-SQYDASVRERVSLV-GVSMPIPLFNRNQGNVLAATRRAD 305
           ++ + L + +  P   V+ G  +Y+AS  +   LV G+S+P    +RN G + A   + D
Sbjct: 269 QSQMELARIEAKPQWQVTAGVRRYEAS--DDFGLVAGISIPWGSSDRNAGTIAALQAQQD 326

Query: 306 QARDLRNATELRLRTETRQAVDLWQSANTEVRVFN---QQILPAAQSAVDSATRGFEMGK 362
              + +NA    ++ +  Q   L Q       V +     I+P  + A+  A+  F+ G 
Sbjct: 327 VLANEQNAL---MQAQDAQLYVLLQEMAHSAHVIDTVRSDIVPTLEKALSEASNAFDKGL 383

Query: 363 FSFLDVLDAQRTLIAARTQYLTATAQATDAWVRIERIYG 401
            S+    D  R L++A+ Q L A        + I+R+ G
Sbjct: 384 LSYNQYNDVYRELLSAQYQLLDAFESLHLQHIEIQRLTG 422