Pairwise Alignments

Query, 295 a.a., type II secretion system protein F from Pseudomonas simiae WCS417

Subject, 327 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 77/272 (28%), Positives = 126/272 (46%), Gaps = 11/272 (4%)

Query: 25  RRRERRVAERLQGRMAGEDRLGSLMRQLGGSALAQRSVSLDNETQTLLNRVGWRKASQRS 84
           R R R  AE   GR +   +  + +R++    L  R   +D+ T   L   G+R  +  +
Sbjct: 57  RERARLNAEATTGRASLRAQHNTSVREIV-ERLNLRKALVDDNTVNRLKTAGYRSQNALN 115

Query: 85  LFAAFQIGTPIVSLGLTLLGQQLLFPHAT-PVWIASMFALG---IGYLLPKRVLAAAAKH 140
            F   +   P + L + +L   +L   A  P+ +   FA+G   +G+  P   +A A   
Sbjct: 116 TFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISK 175

Query: 141 RQQTIAKEVSTFIPLLRILFESGMAVEQSLRVLSNEAQRLLPALTHELRLILARVDSGLE 200
           RQQ+I +     + LL I  ESG+++E ++R +++E     P L  EL L  A +    E
Sbjct: 176 RQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPE 235

Query: 201 LG---EELGKTARLLEVDEFTDTCIILQQLIHQGGGAMKSLLALKQLLDDRRLTRLQEYI 257
                E LG    L EV   T   I   Q    G    ++L  L Q   D+R+T  ++  
Sbjct: 236 RRIALENLGLRTGLDEVKSVTQALI---QADRYGTPVAQALRVLAQESRDQRMTAAEKKA 292

Query: 258 SKMSAKMSVVMMVFLFPALLIVLGGPAFIGIA 289
           + +  K++V M++F  P L+ V+ GPA I +A
Sbjct: 293 AALPPKLTVPMILFFLPVLVAVILGPAGIQVA 324