Pairwise Alignments

Query, 262 a.a., LuxR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 209 a.a., DNA-binding nitrate/nitrite response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 43/239 (17%)

Query: 10  VLVVDDQPLIVEELCEFLESSGYRCV--PCGSSRQALQRFSEDAEIGLVLCDLHMPDMDG 67
           VLVVDD PL+ + +C+ + S     +    GS   AL   + D E  +VL DL+M  M G
Sbjct: 7   VLVVDDHPLLRKGICQLITSDPDFSLFGEVGSGLDALSSVATD-EPDIVLLDLNMKGMTG 65

Query: 68  IELVQAMQKVAGKARAFEAIMLTGRADKQDVIKALRTGISDYYQKPINLDELLEGLQRQE 127
           ++ + AM++    +R    ++LT    KQDVI+ LR G   Y  K    D LL+ L    
Sbjct: 66  LDTLNAMRQEGVTSRI---VILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKL---- 118

Query: 128 AALEERQKELQLGHLNQKLQYLSESINDLYQDLDKVRRSPGAGGTDDGELVAEDAGSVEI 187
                  K    GH     + +SE + +   +L            D+ E V+        
Sbjct: 119 -------KNTMSGH-----RVISEEVAEYLYELKNA--------ADEQEWVSS------- 151

Query: 188 PTIFNQLSPRQLDVARLVGKGQTNYQIACELGITENTVKLYVSQVLRLTHMHNRTQLAL 246
                 L+PR+L + + + +G +N  I+  L I+E TVK++V  +LR  +  +RT++A+
Sbjct: 152 ------LTPRELQILQQLAEGLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAV 204