Pairwise Alignments

Query, 528 a.a., cytochrome oxidase subunit I from Pseudomonas simiae WCS417

Subject, 478 a.a., cytochrome c oxidase, cbb3-type, subunit I (RefSeq) from Shewanella sp. ANA-3

 Score = 82.0 bits (201), Expect = 4e-20
 Identities = 93/418 (22%), Positives = 170/418 (40%), Gaps = 54/418 (12%)

Query: 46  LLGGSFAMVIRAELFQPGLQIVQPAF-FNQMTTMHGLIMVFGAVMPAFVGLANWMIPLMI 104
           ++G S  ++I A+L  P L    P F ++++  +H   ++F     A    + +++    
Sbjct: 29  IVGMSVGVLIAAQLIWPHLNFDTPWFTYSRLRPLHTNAVIFAFGTSALFATSYYVVQRTC 88

Query: 105 GAPDMALPRMNNFSFWLLPAAFLLLVSTL---FTPGGG-PNFGWTFYAPLSTTYAPESVT 160
                A P++  F+FW   A  L    TL   +T G       W     ++  +   ++ 
Sbjct: 89  QTRLFA-PKLAAFTFWGWQAIILSAAITLPMGYTSGKEYAELEWPIDIAITIVWVSYAIV 147

Query: 161 FFIFAIHLMGISSIMGAINVVATILNLRAPGMTLMKMPLFVWTWLITAFLL-IAVMPVLA 219
           FF                    TI+             ++V  W   AF++ +AV+ +  
Sbjct: 148 FF-------------------GTIIKRTTSH-------IYVANWFFGAFIITVAVLHI-- 179

Query: 220 GCVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAF-GAVSSIIPTFS 278
             V  M + +    S+   +G  D +    V W++GH  V  ++   F G +   +P  +
Sbjct: 180 --VNSMAVPVSLFKSYSMYSGAVDAM----VQWWYGHNAVGFLLTAGFLGMMYYFVPKQA 233

Query: 279 RKPLFGY-TSMVYATASIAFLSFIVWA--HHMFVVGIPLVGELFFMYATLLIAVPTGVKV 335
            +P++ Y  S+V+  A IA     +WA  HH+    +P   +   M  +L++  P+   +
Sbjct: 234 GRPVYSYRLSIVHFWALIA---LYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGM 290

Query: 336 FNWVSTM---WQGSLTFETPMLFAVAFVILFTIGGFSGLMLAIAPADFQYHDTYFVVAHF 392
            N + T+   W   L  +  + F V  +  + +  F G M+AI   +   H T + V H 
Sbjct: 291 INGIMTLSGAWH-KLRTDPVLRFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTVGHV 349

Query: 393 HYVLVPGAIFGIFASAYYWLPKWTGH--MYDETLGKLHFWLSFVGMNMAFFPMHFVGL 448
           H   +         S Y+ +P   GH  MY   L  +HFWL+ +G  +    M   G+
Sbjct: 350 HSGALGWVAMVSIGSLYHLIPVLFGHGRMYSIKLVNVHFWLATIGTVLYIVSMWISGV 407



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 13/124 (10%)

Query: 72  FNQMTTMHGLIMVFGAVMPAFVGLANWMIPLMIGAPDMALPRMNNFSFWLLPAAFLLLVS 131
           +   T  H      G V    +G    +IP++ G   M   ++ N  FWL     +L + 
Sbjct: 341 YTDWTVGHVHSGALGWVAMVSIGSLYHLIPVLFGHGRMYSIKLVNVHFWLATIGTVLYIV 400

Query: 132 TLFTPGGGPNFGW-----------TFYAPLSTTYAPESVTFFIFAIHLMGISSIMGAINV 180
           +++  G      W           +F   L  +Y    V F      L G+  ++ A NV
Sbjct: 401 SMWISGVMQGLMWRAVNADGTLTYSFVESLEASYPFYFVRFLGGCFFLTGM--LIMAYNV 458

Query: 181 VATI 184
           + T+
Sbjct: 459 IRTV 462