Pairwise Alignments

Query, 763 a.a., penicillin-binding protein 1C from Pseudomonas simiae WCS417

Subject, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

 Score =  110 bits (276), Expect = 2e-28
 Identities = 67/203 (33%), Positives = 110/203 (54%), Gaps = 4/203 (1%)

Query: 28  VLAEDGTPLWRFADANGVWRYPVQTHEVSPYYLDALLTYEDRWFYQHPGVNPLALARATW 87
           V ++DG  + +F +     R P++  E+    ++A++  ED  +Y+H G +P+ + RA +
Sbjct: 60  VFSQDGKLIAQFGEKR---RIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAF 116

Query: 88  QNLTGARVVSGGSTLSMQVAR-LLDPHSRTFHGKLRQLWRTAQLEWHLSKAEILNLYLNR 146
             L       G ST++ Q+AR     + +    K+++++    +E  LSK EIL LYLN+
Sbjct: 117 AVLASGSASQGASTITQQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNK 176

Query: 147 APFGGTLQGVAAASWAYLGKSPSQLTHAEAALLAVLPQAPSRLRPDRHPQRAQEARDKVL 206
              G    GV AA+ AY GK    LT  E AL+A LP+APS + P    +RA   R+ VL
Sbjct: 177 IYLGYRSYGVGAAAQAYFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVL 236

Query: 207 RRLAEFQVWPQSAVDEALEEPLL 229
           +R+ + +   ++  D A  EP+L
Sbjct: 237 QRMLDEKYITKAEYDAARAEPVL 259



 Score = 57.0 bits (136), Expect = 4e-12
 Identities = 72/312 (23%), Positives = 119/312 (38%), Gaps = 58/312 (18%)

Query: 265 RRLEDLLLGWRARLPEHTSAAILVVEEESMAVRAYLGSVDINDAKRFGHVDMISALRSPG 324
           R  +  +  W+     + + A + +  E+ AV A +G  +    K F       ++R  G
Sbjct: 424 RTQDGAITAWKLTQVPNANTAFVAMNPENGAVTALVGGFNFVHNK-FNRATQ--SVRQVG 480

Query: 325 STLKPFLYGMALDDGLIHSESLLQDVPRRYGD------YRPGNFSMGFTGAVPASTALSS 378
           S++KPF+Y  AL+ GL  + +L+ D P    D      +RP N    +TG       L+ 
Sbjct: 481 SSIKPFIYSAALNKGLTLA-TLINDAPINQWDESQGTAWRPKNSPPTYTGPTRLRIGLAQ 539

Query: 379 SLNLPAVQLLEAYGPKRFAAEMRIGGVPLALPALAEPNLALILGGAGSRLEDLVSGYSAF 438
           S N+ AV++L   G       +   G  L     +E    + LG        +  G+S F
Sbjct: 540 SKNVMAVRVLREVGLDETREYLTRFGFKLDQLPRSE---TIALGAGSLTPVQMAQGFSVF 596

Query: 439 ARDG---------------KSATLRLQPD-----------DTLRERPLLSP--------G 464
           A +G                +     +P            D   E+   SP         
Sbjct: 597 ANNGYFVEPFYISRVENPFGNIEFSAEPKVVCHRECSSELDEFAEQDAASPYAPKVISEQ 656

Query: 465 SAWIVRRIL------SGQARPD-----RDPRAELVQRPVLAWKTGTSYGFRDAWAIGVGP 513
           +A++ R +L       G+   D        RA+ ++R  +  KTGT+   +DAW  G  P
Sbjct: 657 NAFLTREMLYSNIWGGGEWSSDTGWNGTGWRAQALKRRDIGGKTGTTNDSKDAWYNGYAP 716

Query: 514 RYLIGVWIGRPD 525
             +   W+G  D
Sbjct: 717 GIVGVAWVGFDD 728