Pairwise Alignments

Query, 375 a.a., cytochrome B559 subunit alpha from Pseudomonas simiae WCS417

Subject, 315 a.a., cytochrome c oxidase subunit II from Synechococcus elongatus PCC 7942

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 80/321 (24%), Positives = 125/321 (38%), Gaps = 80/321 (24%)

Query: 11  LLLWSVFGQAHAAWTTNMAPGATEVSHAVFDLHMTIFWICVVIGIIVFGAMFWSMILHRR 70
           L LW  +GQ H       A  A  V      L  T+  I   + ++V G +F  +   RR
Sbjct: 19  LSLW--YGQNHGLLPVAAATDAPLVD----GLFNTMMTIATGLFLLVQGLIFVILWRFRR 72

Query: 71  STGQV--AAKFHESTTVEILWTVVPLLILIAM---------------------------- 100
               V  AA  H +  +EILWT +P++I++ +                            
Sbjct: 73  KPNDVTDAAPIHGNLALEILWTGIPVVIVLGLSVYSFSVYTTMGGLSVGHGGGHMAHAQP 132

Query: 101 ---AIPATKTLINIYDSSES---------------DIDIQVTGYQWKWHYKYLGQDVEFF 142
              AI A  +  ++ DS  +               D+ + V G Q+ W + Y   ++   
Sbjct: 133 RDSAIAAELSSDSLQDSKSTPRVSAGLGAPTEALPDVTVNVKGLQFAWIFNYPSHNLI-- 190

Query: 143 SNLATPAEQIHNQATKGEHYLLEVDQPLVLPVGAKVRFLVTAADVIHSWWVPAFAVKRDA 202
                 A ++H                  LP+G  V+  + A DVIH++WVP F +K+DA
Sbjct: 191 ------AGELH------------------LPLGKSVQLEIEAQDVIHAFWVPQFRLKQDA 226

Query: 203 IPGFVNEAWTRVEKPGIYRGQCAELCGKDHGFMPIVVEVKSKADYETWLGERKAEAAKLK 262
           IPG          + G Y   CAELCG  HG M   V V++  DY+ W+  +   AA + 
Sbjct: 227 IPGERTRLQFTPTQLGTYPIVCAELCGSYHGAMRSQVIVETPEDYDRWIQSQTTTAAVVP 286

Query: 263 ELTSKEWTLEELVARGDKVYH 283
                     +L    + ++H
Sbjct: 287 SRLETATAALDLQVEPEHLHH 307