Pairwise Alignments

Query, 556 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

Subject, 544 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  248 bits (633), Expect = 4e-70
 Identities = 167/541 (30%), Positives = 263/541 (48%), Gaps = 19/541 (3%)

Query: 6   DPSRERLKQHFAQRVIHQARQILEIWQRLQRSEWSSADLAELSEANLRLLRFAERFEQPE 65
           + S E+LK+ +   +  + +QI+ +W  L R  W S  L+ +      L   +E F   E
Sbjct: 4   EESLEQLKRQYLHALPDKKKQIITLWVSL-RKNWQSYMLSAVYREVHNLKGSSETFGLTE 62

Query: 66  HSQLARHIGDSLKAVDENRG---RLSSHLITELNRLMQR----LSRTGLRQGDQLEQTFL 118
              +   +   LK + +       L   L T  ++L+Q     L    + +    +  + 
Sbjct: 63  TKDIVDKLELQLKNLLDAPAPTLNLIKGLDTLFHQLLQNNQHYLPAAPVVEAQMQQNPYN 122

Query: 119 PPMRKPIY---VMLADHDRAERLAKQLEFFGMSAQSLDSVAAFRASMAERLPSAIVMDV- 174
           P   +  Y   ++  D++    + KQL  FG + Q   +   F           I++D+ 
Sbjct: 123 PSKARHEYCIAIIEDDNNVGAMITKQLHEFGFNVQHFLNFTDFIKVQYASPFDLILLDLI 182

Query: 175 --DFCGTGLGLKLAAEAQEGLEHKLPLLFFSLHETDTPTRLAAVRAGGQEFLTGTLEASS 232
             D+    L      EA    E     +F     +D   RL A+RA   E+     E + 
Sbjct: 183 LPDYTEDAL-----FEAACEFEKNNTRVFVLSSRSDFDMRLLAIRANVSEYFVKPAETTL 237

Query: 233 LLEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRSLIEPIQAMAELADFQ 292
           L+ KI     ++   P KVL++DD ++   +   LL S G++ R + +P Q +  L  F+
Sbjct: 238 LVRKIHQWLKMSDKPPLKVLLVDDQQSMVDYFSSLLRSHGLMVRGMTKPEQVIPTLEQFE 297

Query: 293 PDLIILDMYMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKP 352
           PDL I D+YMP   G ELA++IR  D+Y S PI+ LS++D +  ++  +  G DD ++K 
Sbjct: 298 PDLFIFDLYMPGVNGLELARMIRQLDKYTSSPILVLSSDDTMQNKVSIIQAGSDDLISKQ 357

Query: 353 IKPRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCSFRARRENKPLSFAM 412
             P   +T V +RA R   +++   RDSLTGL NHT IL     C   A+R N  +  AM
Sbjct: 358 TAPSLFVTQVISRAQRGHDIRSSASRDSLTGLLNHTQILVAARHCINLAKRANSSVCIAM 417

Query: 413 LDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDYIGRYGGEEFAIVMPDTDLESAC 472
           LD+DHFK+VND++GH  GD+V+ + A  L+Q LR  D++GRYGGEEF +V+PD       
Sbjct: 418 LDLDHFKQVNDTYGHSGGDKVLLAFAHLLQQSLRAADFMGRYGGEEFMLVIPDMPAPLVI 477

Query: 473 QVLDEIRGRFAEIHYPAQPQDLWCTFSAGLVELCDGSDSLMMAAQADEALYRAKDAGRNR 532
             ++ IR  F+ I +  +  +   T S GL    +  +       AD+ LY AK  GRNR
Sbjct: 478 AKVNAIRESFSNIVFVEEGAEFKVTLSGGLAFSTECHEFQECLLLADKNLYEAKRTGRNR 537

Query: 533 V 533
           +
Sbjct: 538 I 538